View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_40 (Length: 288)
Name: NF0713_low_40
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 84 - 288
Target Start/End: Original strand, 44079422 - 44079626
Alignment:
| Q |
84 |
acatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcctcgaccg |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44079422 |
acatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcctcgactg |
44079521 |
T |
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| Q |
184 |
gaccccaccgccacgtggctacaccgaactcctctgcactacgttcaaatcgcccttgcatctccgtacgatatccaccaacaactttgattgtgccaga |
283 |
Q |
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| T |
44079522 |
gaccccaccgccacgtggctacaccaaactcctctgcactacgttcaaatcgcccttgcatctccgtacgatatccaccaacaactttgattgtgccaga |
44079621 |
T |
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| Q |
284 |
gccat |
288 |
Q |
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||||| |
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| T |
44079622 |
gccat |
44079626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 84 - 288
Target Start/End: Original strand, 44074482 - 44074686
Alignment:
| Q |
84 |
acatcatcacccttacacatgtacatttttctctccaaatcacaaccatcaacacaagtccttggacatgtggcatcatctaagaactcctcctcgaccg |
183 |
Q |
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|||||||||||| |||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| || |||| |
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| T |
44074482 |
acatcatcacccatacacatgtacattcttctatccaattcacaaccatccacacaagtccttggacaagtggcatcatccaaaaactcctcttcaaccg |
44074581 |
T |
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| Q |
184 |
gaccccaccgccacgtggctacaccgaactcctctgcactacgttcaaatcgcccttgcatctccgtacgatatccaccaacaactttgattgtgccaga |
283 |
Q |
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|| |||||| ||| |||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| | |
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| T |
44074582 |
gatcccaccaccatgtggctacgtcaaactcctccgcactacgttcaaatcgcccttgcatctccatacgatacccaccaacaactttgatcgtgccaaa |
44074681 |
T |
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| Q |
284 |
gccat |
288 |
Q |
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||||| |
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| T |
44074682 |
gccat |
44074686 |
T |
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