View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_42 (Length: 286)
Name: NF0713_low_42
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 83 - 258
Target Start/End: Original strand, 23852605 - 23852780
Alignment:
| Q |
83 |
gacatcatcagagtgtaaataagaatttaaactgagatcaagaaaggtcaattttgtgaggtttccaaggctatttgggatcatcccactcaattgcgaa |
182 |
Q |
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| T |
23852605 |
gacatcatcagagtgtaaataagtattgaaactgagatcaagaaaggacaattttgtgaggtttccaaggttatttgggatcttaccactcaaatgggag |
23852704 |
T |
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| Q |
183 |
tcagcgagagaaaggaattttaacttattcataaaattgataaactttggtattggacttgaattgaaattgtttc |
258 |
Q |
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| T |
23852705 |
tcatagagagaaagaaattgtaactgattcatagaatggataaactttggtattggacttgaattgaaattgtttc |
23852780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 22619298 - 22619472
Alignment:
| Q |
84 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaaggtcaattttgtgaggtttccaaggctatttgggatcatcccactcaattgcgaat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |||||||| | |||| |
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| T |
22619298 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
22619397 |
T |
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| Q |
184 |
cagcgagagaaaggaattttaacttattcataaaattgataaactttggtattggacttgaattgaaattgtttc |
258 |
Q |
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| T |
22619398 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttc |
22619472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 84 - 258
Target Start/End: Original strand, 23751905 - 23752079
Alignment:
| Q |
84 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaaggtcaattttgtgaggtttccaaggctatttgggatcatcccactcaattgcgaat |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| || |||||||| | |||| |
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| T |
23751905 |
acatcatcagagtgtaaataagaatttaaactgagatcaagaaagttcaattttgtgaggtttctaaggttatttgggattattccactcaaattggaat |
23752004 |
T |
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| Q |
184 |
cagcgagagaaaggaattttaacttattcataaaattgataaactttggtattggacttgaattgaaattgtttc |
258 |
Q |
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||| || ||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||| |||||||||| |
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| T |
23752005 |
cagagatagaaaggaattttaactgattcattaaatggataaatgttggtattggacttgaatttaaattgtttc |
23752079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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