View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_43 (Length: 279)
Name: NF0713_low_43
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 5677814 - 5678016
Alignment:
| Q |
40 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatttt-ttatcaagtgtaacatctttgattaaaacatcaagtccc |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
5677814 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatttttttatcaagtgtaacttctttgattaaaacatcaagtccc |
5677913 |
T |
|
| Q |
139 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5677914 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcatttgtgagtttgcatctcaatctctattgtct |
5678013 |
T |
|
| Q |
239 |
gtg |
241 |
Q |
| |
|
||| |
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| T |
5678014 |
gtg |
5678016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 5668320 - 5668521
Alignment:
| Q |
40 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatt-ttttatcaagtgtaacatctttgattaaaacatcaagtccc |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
5668320 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattattttatcaagtgtaacttctttgattaaaacatcaagtccc |
5668419 |
T |
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| Q |
139 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
238 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5668420 |
acacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
5668519 |
T |
|
| Q |
239 |
gt |
240 |
Q |
| |
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|| |
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| T |
5668520 |
gt |
5668521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 5743432 - 5743629
Alignment:
| Q |
42 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattttttatcaagtgtaacatctttgattaaaacatcaagtcccaca |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||||||||| |
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| T |
5743432 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattattt--caagtgtgatttctttgattaaaacatcaagtcccact |
5743529 |
T |
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| Q |
142 |
cttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgtg |
241 |
Q |
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| T |
5743530 |
cttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgtg |
5743629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 5780391 - 5780588
Alignment:
| Q |
42 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattttttatcaagtgtaacatctttgattaaaacatcaagtcccaca |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||| | |||||||||||||||||||||||||| |
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| T |
5780391 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattattt--caagtgtgatttctttgattaaaacatcaagtcccact |
5780488 |
T |
|
| Q |
142 |
cttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgtg |
241 |
Q |
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|||||||||||| || | |||||||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
5780489 |
cttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgtg |
5780588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 5692106 - 5692242
Alignment:
| Q |
104 |
caagtgtaacatctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtg |
203 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||| || |
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| T |
5692106 |
caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtc |
5692205 |
T |
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| Q |
204 |
gcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
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|| |||||||||||||||||||||||| ||||||||| |
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| T |
5692206 |
gcctttgtgagtttgcatctcaatctccattgtctgt |
5692242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 5791647 - 5791772
Alignment:
| Q |
115 |
tctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgag |
214 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| ||| ||||||||| ||| ||||||||||||||||| |
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| T |
5791647 |
tctttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggcgtttgtgag |
5791746 |
T |
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| Q |
215 |
tttgcatctcaatctctattgtctgt |
240 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
5791747 |
tttgcatctcaatctccattgtctgt |
5791772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 5751114 - 5751313
Alignment:
| Q |
42 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattt-tttatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| | ||||||||||||||||||||||||| |
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|
| T |
5751114 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5751213 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
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||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5751214 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt |
5751313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 5788073 - 5788272
Alignment:
| Q |
42 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattt-tttatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| | ||||||||||||||||||||||||| |
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|
| T |
5788073 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5788172 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
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||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5788173 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt |
5788272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 5692070 - 5692110
Alignment:
| Q |
42 |
catcatcagctaccatatgttctatttggtctttcacaagt |
82 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692070 |
catcatcagctaccatatgttctatttggtctttcacaagt |
5692110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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