View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_44 (Length: 276)
Name: NF0713_low_44
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 36791170 - 36791375
Alignment:
| Q |
36 |
gcatagggagagaaagttcttttataacatctagaaatgggaaattcctaagaacaacattcttatgtttcttcttttaacatttataggt--------- |
126 |
Q |
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| T |
36791170 |
gcatagggagagaaagttcttttataacatctagaaatgggaaattcctaagaacaaaattcttatgtttcttcttttaacatttatagataatattctt |
36791269 |
T |
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| Q |
127 |
--aataagctatactatcgtcaaggattcccatttcgacacaaaattttactcaaacaatgcacacttatgtaatcttccactatattttgtcgcttttg |
224 |
Q |
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| T |
36791270 |
agaataagctatactattttcaaggattcccatttcgacacataattttactcaaacaatgcaccctcatgtaatcttccactatattttgtcgcttttg |
36791369 |
T |
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| Q |
225 |
atgatg |
230 |
Q |
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|||||| |
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| T |
36791370 |
atgatg |
36791375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 36783043 - 36783188
Alignment:
| Q |
84 |
taagaacaacattcttatgtttcttcttttaacatttataggtaata-----------agctatactatcgtcaaggattccc-atttcgacacaaaatt |
171 |
Q |
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| T |
36783043 |
taagaacgaaattcttatgtttcttcttttaacatttataggtaatattcttagaataagctctac-attgtcaaggatcccccattccgacacaaaatt |
36783141 |
T |
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| Q |
172 |
ttactcaaacaatgcacacttatgtaatcttccactatattttgtcg |
218 |
Q |
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| T |
36783142 |
taactcaaacaatgcaccctcacgtaatcttccactatattttgtcg |
36783188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 36753011 - 36753086
Alignment:
| Q |
143 |
gtcaaggattcccatttcgacacaaaattttactcaaacaatgcacacttatgtaatcttccactatattttgtcg |
218 |
Q |
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| T |
36753011 |
gtcaaggatccccattcggacaaaaaatttaactcaaataatgcaccctcacgtaatcttccactatattttgtcg |
36753086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 36770639 - 36770706
Alignment:
| Q |
66 |
ctagaaatgggaaattcctaagaacaaca---ttcttatgtttcttcttttaacatttataggtaataa |
131 |
Q |
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| T |
36770639 |
ctagaaatgggaaactcctaagaaaaataaaattcttatgtttcttcttttaac-tttataggtaataa |
36770706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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