View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_46 (Length: 272)

Name: NF0713_low_46
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_46
NF0713_low_46
[»] chr3 (10 HSPs)
chr3 (20-189)||(36825861-36826029)
chr3 (133-184)||(50663200-50663251)
chr3 (133-174)||(10839391-10839432)
chr3 (133-184)||(54546970-54547021)
chr3 (133-171)||(33103822-33103860)
chr3 (212-250)||(36826049-36826087)
chr3 (133-175)||(43347347-43347389)
chr3 (133-174)||(6280370-6280411)
chr3 (135-184)||(19649385-19649434)
chr3 (133-185)||(22845373-22845425)
[»] chr7 (5 HSPs)
chr7 (133-184)||(17303125-17303176)
chr7 (133-177)||(43342483-43342527)
chr7 (133-184)||(10334244-10334295)
chr7 (133-184)||(44164754-44164805)
chr7 (133-173)||(15017850-15017890)
[»] chr6 (1 HSPs)
chr6 (137-184)||(27863765-27863812)
[»] chr4 (5 HSPs)
chr4 (133-184)||(47084078-47084129)
chr4 (135-184)||(10094406-10094455)
chr4 (135-184)||(12792244-12792293)
chr4 (218-250)||(12792332-12792364)
chr4 (133-173)||(19124749-19124789)
[»] chr2 (2 HSPs)
chr2 (72-184)||(41674657-41674768)
chr2 (218-250)||(28321804-28321836)
[»] chr8 (1 HSPs)
chr8 (133-184)||(2824193-2824244)
[»] chr5 (6 HSPs)
chr5 (133-176)||(29491425-29491468)
chr5 (212-250)||(22903252-22903290)
chr5 (133-175)||(33188334-33188376)
chr5 (133-174)||(36769085-36769126)
chr5 (133-173)||(27916217-27916257)
chr5 (134-174)||(33271282-33271322)
[»] chr1 (3 HSPs)
chr1 (133-175)||(10907659-10907701)
chr1 (134-184)||(38859917-38859967)
chr1 (136-184)||(42456638-42456686)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 36825861 - 36826029
Alignment:
Q  20 gacatcatcgaaatccaaaacttatgatgtttagttattcatacttcgagagaggggttgttctaaggcccgattagcctggacagttgtctcggttctg 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||  |||| ||  || |  ||||||| ||| ||||    
T  36825861 gacatcatcgaaatccaaaacttatggtgtttagttattcatacttcgagacaggggtggttctaagatccgactaatctaggtagttgtcccggctctg 36825960  T
Q  120 acccaannnnnnngcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatttcttt 189  Q
     | |||       |||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||    
T  36825961 gctcaa-ttttttgcaatttcttatgtaaacctctttaaatttctcatataaacccttataaatttcttt 36826029  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 50663251 - 50663200
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||||||||||| ||| || |||||||||||||||||||||| ||||||    
T  50663251 gcaatttcttatgtagattcctctaaatttcttatataaacccttataaatt 50663200  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 10839391 - 10839432
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacc 174  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  10839391 gcaatttcttatgtaaatttctctgaatttcttatataaacc 10839432  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 54547021 - 54546970
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||||||| ||||||| |||| |||||||||||||||||| | ||||||    
T  54547021 gcaatttcttacgtaaattcctttgaatttcttatataaacccctataaatt 54546970  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 33103860 - 33103822
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataa 171  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  33103860 gcaatttcttatgtaaattcccttaaatttcttatataa 33103822  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 36826049 - 36826087
Alignment:
Q  212 ttgcagtttcttatataaacctctataaatgtgttgcaa 250  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  36826049 ttgcagtttcttatgtaaacccctataaatgtgttgcaa 36826087  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 43347347 - 43347389
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaaccc 175  Q
    ||||||||||||||||||| || | ||||||||||||||||||    
T  43347347 gcaatttcttatgtaaattcctctgaatttcttatataaaccc 43347389  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 6280370 - 6280411
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacc 174  Q
    |||||||||||||||||||||  | |||||||||||||||||    
T  6280370 gcaatttcttatgtaaatttccctgaatttcttatataaacc 6280411  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 19649385 - 19649434
Alignment:
Q  135 aatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||||||||||||  || | |||||||||||||||||||| ||||||    
T  19649385 aatttcttatgtaaatcgctatgaatttcttatataaacccttataaatt 19649434  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 22845373 - 22845425
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaattt 185  Q
    |||||||||||||||||||    |||||||||||||||||||| | |||||||    
T  22845373 gcaatttcttatgtaaattcacctaaatttcttatataaacccctataaattt 22845425  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 17303125 - 17303176
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  17303125 gcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaatt 17303176  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 43342527 - 43342483
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaaccctt 177  Q
    ||||||||||||||||||| || | ||||||||||||||||||||    
T  43342527 gcaatttcttatgtaaattcctctgaatttcttatataaaccctt 43342483  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 10334295 - 10334244
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||||||||||||||| || | |||||||||||||||| ||| ||||||    
T  10334295 gcaatttcttatgtaaattcctctgaatttcttatataaactcttataaatt 10334244  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 44164754 - 44164805
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||| ||||||||||| | |||||||||||||||||| | ||||||    
T  44164754 gcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaatt 44164805  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 15017890 - 15017850
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaac 173  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  15017890 gcaatttcttatgtaaattcctctgaatttcttatataaac 15017850  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 27863812 - 27863765
Alignment:
Q  137 tttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaatt 27863765  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 47084129 - 47084078
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||||||||| | |||||||||||||||||| | ||||||    
T  47084129 gcaatttcttatgtaaatttctctgaatttcttatataaacccctataaatt 47084078  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 10094406 - 10094455
Alignment:
Q  135 aatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||||||| | |||||||||||||||||| | ||||||    
T  10094406 aatttcttatgtaaatttctctgaatttcttatataaacccctataaatt 10094455  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 12792244 - 12792293
Alignment:
Q  135 aatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||||||| | |||||||||||||||||| | ||||||    
T  12792244 aatttcttatgtaaatttctctgaatttcttatataaacccctataaatt 12792293  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 12792332 - 12792364
Alignment:
Q  218 tttcttatataaacctctataaatgtgttgcaa 250  Q
    |||||||||||||| ||||||||||||||||||    
T  12792332 tttcttatataaacatctataaatgtgttgcaa 12792364  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 19124749 - 19124789
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaac 173  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  19124749 gcaatttcttatgtaaattcctctgaatttcttatataaac 19124789  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 41674657 - 41674768
Alignment:
Q  72 aggggttgttctaaggcccgattagcctggacagttgtctcggttctgacccaannnnnnngcaatttcttatgtaaatttctttaaatttcttatataa 171  Q
    |||||| ||||||||||||||  ||||||| ||||||||  || || |||||||       |||||||||||||||||| ||| | ||||| ||||||||    
T  41674657 aggggtggttctaaggcccgacgagcctgggcagttgtcgaggctccgacccaatgttat-gcaatttcttatgtaaatctctctgaattttttatataa 41674755  T
Q  172 acccttgtaaatt 184  Q
    |||||| ||||||    
T  41674756 acccttataaatt 41674768  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 28321804 - 28321836
Alignment:
Q  218 tttcttatataaacctctataaatgtgttgcaa 250  Q
    ||||||||||||||| |||||||||||||||||    
T  28321804 tttcttatataaacccctataaatgtgttgcaa 28321836  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 2824193 - 2824244
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    ||||||| ||||||||||| || |||||||||||||||| ||||| ||||||    
T  2824193 gcaattttttatgtaaattcctctaaatttcttatataaccccttataaatt 2824244  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 29491425 - 29491468
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaaccct 176  Q
    |||||||||||||||||||||| | |||||||||||||| ||||    
T  29491425 gcaatttcttatgtaaatttctatgaatttcttatataacccct 29491468  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 22903290 - 22903252
Alignment:
Q  212 ttgcagtttcttatataaacctctataaatgtgttgcaa 250  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  22903290 ttgcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 33188334 - 33188376
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaaccc 175  Q
    |||||||||||||||||||  | ||||||||||||||||||||    
T  33188334 gcaatttcttatgtaaattcatctaaatttcttatataaaccc 33188376  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 36769085 - 36769126
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaacc 174  Q
    ||||||||||||||||||| || | |||||||||||||||||    
T  36769085 gcaatttcttatgtaaattcctctgaatttcttatataaacc 36769126  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 27916257 - 27916217
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaac 173  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  27916257 gcaatttcttatgtaaattcctctgaatttcttatataaac 27916217  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 33271282 - 33271322
Alignment:
Q  134 caatttcttatgtaaatttctttaaatttcttatataaacc 174  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  33271282 caatttcttatgtaaattccgttgaatttcttatataaacc 33271322  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 10907659 - 10907701
Alignment:
Q  133 gcaatttcttatgtaaatttctttaaatttcttatataaaccc 175  Q
    ||||||||||||||||||| || | ||||||||||||||||||    
T  10907659 gcaatttcttatgtaaattcctctgaatttcttatataaaccc 10907701  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 38859967 - 38859917
Alignment:
Q  134 caatttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||||| || | |||||||||||||||||| | ||||||    
T  38859967 caatttcttatgtaaattcctatgaatttcttatataaacccctataaatt 38859917  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 42456686 - 42456638
Alignment:
Q  136 atttcttatgtaaatttctttaaatttcttatataaacccttgtaaatt 184  Q
    |||||||||||||||| || | |||||||||||||||||| | ||||||    
T  42456686 atttcttatgtaaattcctatgaatttcttatataaacccctataaatt 42456638  T

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