View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_53 (Length: 261)
Name: NF0713_low_53
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30605386 - 30605607
Alignment:
| Q |
1 |
cctaagaggagaaggaagagttaggatagtgaactgtgaaggaaacaccgtgttcgacgactgggtgagaaagggacagttggtggtggtaccacagaac |
100 |
Q |
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| T |
30605386 |
cctaacaggagaaggaagagttaggatagtgaactgtgaaggaaacgccgtgttcgacgactgggtgagaaagggacagatggtggtggtaccacagaac |
30605485 |
T |
|
| Q |
101 |
tttgtggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacagagcttctgttaacaatgtaaagcaggtgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
30605486 |
tttgtggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacggagcttctgttaacaatgtaaagtaggtgttca |
30605585 |
T |
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| Q |
201 |
gggccactcctgcacaggttct |
222 |
Q |
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|||||||||||||| ||||||| |
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| T |
30605586 |
gggccactcctgcagaggttct |
30605607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 32252977 - 32252758
Alignment:
| Q |
3 |
taagaggagaaggaagagttaggatagtgaactgtgaaggaaacaccgtgttcgacgactgggtgagaaagggacagttggtggtggtaccacagaactt |
102 |
Q |
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| T |
32252977 |
taagaggacaaggaagagttaggatagtgaactgccaaggtaacgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactt |
32252878 |
T |
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| Q |
103 |
tgtggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacagagcttctgttaacaatgtaaagcaggtgttcagg |
202 |
Q |
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| T |
32252877 |
tgtggtggcgcaacaagccggaaatgaagaagcatttgagtatgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagg |
32252778 |
T |
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| Q |
203 |
gccactcctgcacaggttct |
222 |
Q |
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||||| ||||| ||||||| |
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| T |
32252777 |
gccacccctgctgaggttct |
32252758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 32248225 - 32248023
Alignment:
| Q |
5 |
agaggagaaggaagagttaggatagtgaactgtgaaggaaacaccgtgttcgacgactgggtgagaaagggacagttggtggtggtaccacagaactttg |
104 |
Q |
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|||||| ||||||||||||||||||||||||| |||| ||| | |||||||| ||| || |||| |||||||||| ||||||| ||||| ||||| | |
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| T |
32248225 |
agaggacaaggaagagttaggatagtgaactgccaaggcaacgcggtgttcgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcg |
32248126 |
T |
|
| Q |
105 |
tggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacagagcttctgttaacaatgtaaagcaggtgttcagggc |
204 |
Q |
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| T |
32248125 |
tggtggcggaacaagcagggaacgaagaagcattagagtatgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggc |
32248026 |
T |
|
| Q |
205 |
cac |
207 |
Q |
| |
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||| |
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| T |
32248025 |
cac |
32248023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 32242395 - 32242193
Alignment:
| Q |
5 |
agaggagaaggaagagttaggatagtgaactgtgaaggaaacaccgtgttcgacgactgggtgagaaagggacagttggtggtggtaccacagaactttg |
104 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||| ||| | ||||| || ||| || |||| |||||||||| ||||||| ||||| ||||| | |
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| T |
32242395 |
agaggacaaggaagagttaggatagtgaactgccaaggtaacgcagtgtttgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcg |
32242296 |
T |
|
| Q |
105 |
tggtggtgcagcaagctggagaggaagaagcatttgagtacatagtgttcaagacaaatgacagagcttctgttaacaatgtaaagcaggtgttcagggc |
204 |
Q |
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| T |
32242295 |
tggtggcggaacaagcagggaacgaagaagcattagagtatgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggc |
32242196 |
T |
|
| Q |
205 |
cac |
207 |
Q |
| |
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||| |
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| T |
32242195 |
cac |
32242193 |
T |
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Back To:
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