View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_54 (Length: 259)
Name: NF0713_low_54
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_54 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 14384600 - 14384830
Alignment:
| Q |
24 |
tcatcatcatcatcctgttcttcgccgtgttcgacnnnnnnnt-attttgattaaccggaagtgtctcggatgaaagttgaacgtcatcattcattacga |
122 |
Q |
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| T |
14384600 |
tcatcatgatcatcctattcttcgtcgtgttcgacagaaaaattattttgattaactggaagtgtctcggatgaaagttgcacgtcatcattcattacga |
14384699 |
T |
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| Q |
123 |
attcttctagctccaaaacatgtgtattaggccgaggtagattaccttgaggaataggttcagaaaaaccttgcaagttgttgcaagtggtacctgttgc |
222 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14384700 |
attctgctagctccaaaacatgtgtattaggcagaggtagattaccttgaggaataggttcagaaaaaccttgcaagttgctgcaagtggtacctgttgc |
14384799 |
T |
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| Q |
223 |
atcaccggctgcagctgatggcagagggaca |
253 |
Q |
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| T |
14384800 |
atcaccggctgcagctgatggcagagggaca |
14384830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 253
Target Start/End: Complemental strand, 17273826 - 17273596
Alignment:
| Q |
24 |
tcatcatcatcatcctgttcttcgccgtgttcgacnnnnnnnt-attttgattaaccggaagtgtctcggatgaaagttgaacgtcatcattcattacga |
122 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||| || ||||||||||| || |
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| T |
17273826 |
tcatcatcatcatcctgttcttcgccgtgttcaacataaatattattttgattaaccggaagtgtctcggatgaacgttgcacatcatcattcatcacag |
17273727 |
T |
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| Q |
123 |
attcttctagctccaaaacatgtgtattaggccgaggtagattaccttgaggaataggttcagaaaaaccttgcaagttgttgcaagtggtacctgttgc |
222 |
Q |
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| T |
17273726 |
attctgctagctccaaaacatgtgtattaggccgaggtagattaccttgaggaataggttcagaaaaaccttgcaagttgctacaagtggtacctgctgc |
17273627 |
T |
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| Q |
223 |
atcaccggctgcagctgatggcagagggaca |
253 |
Q |
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| T |
17273626 |
ctcaccggctgcagctgatggtggagggaca |
17273596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 66 - 243
Target Start/End: Complemental strand, 101549 - 101372
Alignment:
| Q |
66 |
tattttgattaaccggaagtgtctcggatgaaagttgaacgtcatcattcattacgaattcttctagctccaaaacatgtgtattaggccgaggtagatt |
165 |
Q |
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| T |
101549 |
tattttgattaaccggaagtgtctcggatgaacgttgcacatcatcattcattatggattctgctagctccaaaacatgtgtattaggccgaggtagatt |
101450 |
T |
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| Q |
166 |
accttgaggaataggttcagaaaaaccttgcaagttgttgcaagtggtacctgttgcatcaccggctgcagctgatgg |
243 |
Q |
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| T |
101449 |
accttgaggaataggttcaaaaaaaccttgcaagttgctgcaagtggtacctgctgcctcaccggctgcagctgatgg |
101372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 102863 - 102834
Alignment:
| Q |
24 |
tcatcatcatcatcctgttcttcgccgtgt |
53 |
Q |
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| T |
102863 |
tcatcatcatcatcctgttcttcgccgtgt |
102834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 75 - 253
Target Start/End: Original strand, 3008243 - 3008421
Alignment:
| Q |
75 |
taaccggaagtgtctcggatgaaagttgaacgtcatcattcattacgaattcttctagctccaaaacatgtgtattaggccgaggtagattaccttgagg |
174 |
Q |
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| T |
3008243 |
taaccggaagcgtctcggaggaaagttgcacatcatcattcattacggattttgctagctccaaaacatgtgtattaggccgaggtagattaccttgagg |
3008342 |
T |
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| Q |
175 |
aataggttcagaaaaaccttgcaagttgttgcaagtggtacctgttgcatcaccggctgcagctgatggcagagggaca |
253 |
Q |
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| T |
3008343 |
aatagtttcagaaaaaccttgcaagttgctgcaagtggtacctactacatcaccggctgcagctgatggctgggggaca |
3008421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 24574633 - 24574707
Alignment:
| Q |
24 |
tcatcatcatcatcctgttcttcgccgtgttcgac-nnnnnnntattttgattaaccggaagtgtctcggatgaa |
97 |
Q |
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| T |
24574633 |
tcatcatcatcatcctgttcttcgccgtgttcaacagaaaaattattttgattaaccgaaagtgtctcggatgaa |
24574707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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