View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_55 (Length: 259)

Name: NF0713_low_55
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_55
NF0713_low_55
[»] chr4 (4 HSPs)
chr4 (23-246)||(2671792-2672015)
chr4 (23-247)||(20946111-20946330)
chr4 (147-206)||(2672611-2672670)
chr4 (159-206)||(20947236-20947283)
[»] chr2 (5 HSPs)
chr2 (23-245)||(5695961-5696178)
chr2 (23-90)||(30546002-30546068)
chr2 (159-246)||(31559117-31559203)
chr2 (147-204)||(5694996-5695053)
chr2 (159-203)||(42827731-42827775)
[»] chr3 (16 HSPs)
chr3 (23-246)||(1677233-1677451)
chr3 (23-187)||(55196826-55196986)
chr3 (23-246)||(26538551-26538770)
chr3 (23-102)||(13645207-13645286)
chr3 (143-206)||(5385974-5386037)
chr3 (147-206)||(55197939-55197998)
chr3 (143-206)||(5386830-5386893)
chr3 (143-193)||(25529529-25529579)
chr3 (139-205)||(27320295-27320361)
chr3 (139-205)||(27362060-27362126)
chr3 (150-206)||(1678357-1678413)
chr3 (159-219)||(16196470-16196530)
chr3 (139-215)||(27361536-27361612)
chr3 (139-205)||(27319806-27319872)
chr3 (26-75)||(13645106-13645155)
chr3 (158-206)||(34594635-34594683)
[»] chr8 (5 HSPs)
chr8 (23-246)||(7274242-7274460)
chr8 (139-205)||(27410157-27410223)
chr8 (139-205)||(37964244-37964310)
chr8 (149-206)||(7273280-7273337)
chr8 (139-205)||(27410860-27410926)
[»] chr1 (2 HSPs)
chr1 (23-246)||(43882304-43882517)
chr1 (159-246)||(9419380-9419466)
[»] chr7 (3 HSPs)
chr7 (23-239)||(5975252-5975463)
chr7 (159-233)||(41385379-41385452)
chr7 (142-215)||(44815641-44815714)
[»] chr6 (2 HSPs)
chr6 (159-246)||(1134478-1134564)
chr6 (143-233)||(19597549-19597638)
[»] chr5 (2 HSPs)
chr5 (147-193)||(41282674-41282720)
chr5 (143-191)||(41284083-41284131)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 2671792 - 2672015
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  2671792 atcatcaaaatttgaattttaaaacatattattttcaccttcttcctcactatgttacttctctcttcttcatttctgcctgccattcccacccttccat 2671891  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2671892 agctttgcgcgctaacaccaaaaacccatttcattgaacaatgtcttctcattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 2671991  T
Q  223 aaaaattatgatgatgtccatctc 246  Q
    ||||||||||| ||||| ||||||    
T  2671992 aaaaattatgaggatgttcatctc 2672015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 20946111 - 20946330
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||    
T  20946111 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcttcatttctg----ccattcccacccttccat 20946206  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    | |||||| | |||||||||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||     
T  20946207 aactttgcgccctaacaccaaaaactcatttcattgaaccatgtcttctcatttcatttgtcaatcatcatcaaatgagttgccaatatgtggttgcag- 20946305  T
Q  223 aaaaattatgatgatgtccatctca 247  Q
    ||||||||||| ||| | |||||||    
T  20946306 aaaaattatgaggattttcatctca 20946330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 2672670 - 2672611
Alignment:
Q  147 cccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    |||||||| || ||||||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  2672670 cccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagctgcc 2672611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 20947283 - 20947236
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||||||||||    
T  20947283 aacaatgtcttctcatttcatttctcattcatcatcaaatgagttgcc 20947236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 5696178 - 5695961
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||||||    
T  5696178 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcttcatttctg----ccattcccacccttccat 5696083  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    |||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||     
T  5696082 agctttgcgccctaacaccaaaaacccatttcattgaacaatgtattctcattccatttgtcaatcatcatcaaatgagttgccaatatgtggttgcag- 5695984  T
Q  223 aaaaattatgatgatgtccatct 245  Q
    || |||||||| ||||| |||||    
T  5695983 aacaattatgaggatgttcatct 5695961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 30546002 - 30546068
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttc 90  Q
    ||||||||| |||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  30546002 atcatcaaattttgaaatttaaaacc-attatttccaccttcttcctcactctgttatttctctcttc 30546068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 31559203 - 31559117
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgatgatgtccatctc 246  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||| ||| ||||||||| | ||||| |||| ||||| ||||||    
T  31559203 aacaatgtcttctcattccatttctcaatcatcatcaattgagttgcctatatgtggttgca-acaaaataatgaggatgttcatctc 31559117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 5694996 - 5695053
Alignment:
Q  147 cccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttg 204  Q
    |||||||| || ||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  5694996 cccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttg 5695053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 42827731 - 42827775
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagtt 203  Q
    ||||||||||||| ||||||||  |||||||||||| ||||||||    
T  42827731 aacaatgtcttctaattccattactcaatcatcatccaatgagtt 42827775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 1677233 - 1677451
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    ||||||||||||| ||||    
T  1677233 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttctttctctcttcttcatttctg----ccattcccaccctcccat 1677328  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    |||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||     
T  1677329 agctttgcgctctaacaccaaaaactcatttcattgaacaatgtcttctcattccatttgtcaattatcatcaaatgagttgccaatacgtggttgcag- 1677427  T
Q  223 aaaaattatgatgatgtccatctc 246  Q
    ||||||||||| ||||| ||||||    
T  1677428 aaaaattatgaggatgttcatctc 1677451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 55196826 - 55196986
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||    ||||||||||||||||||    
T  55196826 atcatcaaaatttgaattttaaaacatattatttccaccttattcctcactatgttattcctctcttcttcatttatg----ccattcccacccttccat 55196921  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaat 187  Q
    |||||||  | |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55196922 agctttgtgccctaacaccaaaaacccatttcattgaacaatgtcttctcattccatttgtcaat 55196986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 26538770 - 26538551
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtc-tgccattcccacccttcca 121  Q
    ||||| |||||||||| |||||||| |||| |||||||||||||||||||| |||| |||| |||||| ||||||||  | |||    ||||| ||  |     
T  26538770 atcataaaaatttgaaatttaaaacctattttttccaccttcttcctcactctgttctttccctcttcttcatttctaccatgcg---cccactctctcg 26538674  T
Q  122 tagctttgcacgctaacaccaaaaacc-catttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgca 220  Q
    |||||| || | ||||||||||||| | |||||| || |||||||| |||| ||| |||||||||||||||||||||||| ||| ||||| ||||||||     
T  26538673 tagctt-gcgccctaacaccaaaaaactcatttccttcaacaatgtgttctcatttcatttgtcaatcatcatcaaatgatttgtcaatatgtggttgc- 26538576  T
Q  221 gaaaaaattatgatgatgtccatctc 246  Q
     |||||||||||| ||||| ||||||    
T  26538575 -aaaaaattatgaggatgttcatctc 26538551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 13645286 - 13645207
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtc 102  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13645286 atcatcaaaatttgaaatttaaaacatattctttccaccttcttcctcactatgttctttctctcttcttcatttctgtc 13645207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 5385974 - 5386037
Alignment:
Q  143 aaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    ||||| ||||||||| ||||||||||||| ||| ||||| |||||||||||| |||||||||||    
T  5385974 aaaactcatttcattcaacaatgtcttctcatttcatttatcaatcatcatctaatgagttgcc 5386037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 55197998 - 55197939
Alignment:
Q  147 cccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    |||||||| || ||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  55197998 cccatttccttcaacaatgtcttctcattccatttctcattcatcatcaaatgagttgcc 55197939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 5386893 - 5386830
Alignment:
Q  143 aaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    ||||| ||||||||| || |||||||||| |||| |||| |||||||||||| |||||||||||    
T  5386893 aaaactcatttcattcaataatgtcttctcattctatttatcaatcatcatctaatgagttgcc 5386830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 25529579 - 25529529
Alignment:
Q  143 aaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcat 193  Q
    |||||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  25529579 aaaacccatttccttcaacaatgtcttctcattccatttctcaatcatcat 25529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 27320361 - 27320295
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    ||||||||  |||||| || |||||| |||| | ||||||||| |||||||||||||||||||||||    
T  27320361 accaaaaaatcatttccttcaacaatatcttatcattccatttctcaatcatcatcaaatgagttgc 27320295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 27362126 - 27362060
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    ||||||||  |||||| || ||||||||||| | ||| ||||| |||||||||||||||||||||||    
T  27362126 accaaaaaatcatttccttcaacaatgtcttatcatttcatttctcaatcatcatcaaatgagttgc 27362060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1678413 - 1678357
Alignment:
Q  150 atttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    ||||| || ||||||||||||| ||||||||| ||| ||||||| ||||||||||||    
T  1678413 atttccttcaacaatgtcttctcattccatttctcattcatcataaaatgagttgcc 1678357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 16196470 - 16196530
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgc 219  Q
    ||||||||||||||||||||  | ||||||||||||| |||| ||||| ||| ||||||||    
T  16196470 aacaatgtcttcttattccacctctcaatcatcatcatatgacttgcctatatgtggttgc 16196530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 27361536 - 27361612
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtgg 215  Q
    |||||||||||||||| ||  | |||||| ||| ||| ||||| ||| |||||||||||||||||||  ||||||||    
T  27361536 accaaaaacccatttccttccataatgtcgtctgatttcatttctcagtcatcatcaaatgagttgcttatacgtgg 27361612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27319806 - 27319872
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    |||||||||||||||| ||  | |||||||||| ||| ||||| | | |||||||||||||||||||    
T  27319806 accaaaaacccatttccttccataatgtcttctgatttcatttctgagtcatcatcaaatgagttgc 27319872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 13645106 - 13645155
Alignment:
Q  26 atcaaaatttgaattttaaaacatattatttccaccttcttcctcactat 75  Q
    ||||||||||||| | |||||  |||| ||||||||||||||||||||||    
T  13645106 atcaaaatttgaaatgtaaaatgtattctttccaccttcttcctcactat 13645155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 34594635 - 34594683
Alignment:
Q  158 gaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    |||||||||||||| ||| ||||| |||| ||||||||| |||||||||    
T  34594635 gaacaatgtcttctcatttcatttctcaaccatcatcaattgagttgcc 34594683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 7274460 - 7274242
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||| ||    
T  7274460 atcatcaaaatttgaattttaaaacttattatttccaccttcttcctcactatgttatttctctcttcttcatttctg----ccattcccacccttcgat 7274365  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    |||||||| | |||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||     
T  7274364 agctttgcgccctaacaccaaaaactcatttcatggaacaatgtattctcattccatttgtcaatcatcatcaaatgagttgtcaatatgtggttgtag- 7274266  T
Q  223 aaaaattatgatgatgtccatctc 246  Q
    ||||||||||| ||||| ||||||    
T  7274265 aaaaattatgaggatgttcatctc 7274242  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 27410157 - 27410223
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    ||||||||  |||||| || ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  27410157 accaaaaaatcatttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagttgc 27410223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 37964310 - 37964244
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    ||||||||  |||||| || ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  37964310 accaaaaaatcatttccttcaacaatgtcttatcattccatttctcaatcatcatcaaatgagttgc 37964244  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 7273280 - 7273337
Alignment:
Q  149 catttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgcc 206  Q
    |||||| || ||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  7273280 catttccttcaacgatgtcttctcattccatttctcattcatcatcaaatgagttgcc 7273337  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 27410926 - 27410860
Alignment:
Q  139 accaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgc 205  Q
    |||||||||||||||  || || |||||||| | ||| ||||| ||| |||||||||||||||||||    
T  27410926 accaaaaacccattttcttcaataatgtcttatgatttcatttctcagtcatcatcaaatgagttgc 27410860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 43882304 - 43882517
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    | ||||||||||||||||||||    
T  43882304 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcttcatt----tatgccattcccacccttccat 43882399  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    |||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||      |||||||||||||| ||||||||||     
T  43882400 agctttgcgccctaacaccaaaaacccattttattgaacaatgtattctcattccatttgtcaatcat-----gatgagttgccaatatgtggttgcag- 43882493  T
Q  223 aaaaattatgatgatgtccatctc 246  Q
    ||||||||||| ||||| ||||||    
T  43882494 aaaaattatgaggatgttcatctc 43882517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 9419466 - 9419380
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgatgatgtccatctc 246  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||| || |||| ||||| || | ||||| |||| ||||| ||||||    
T  9419466 aacaatgtcttctcattccatttctcaatcatcatcaattgagttccctatacatggttaca-acaaaataatgaagatgttcatctc 9419380  T

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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 5975463 - 5975252
Alignment:
Q  23 atcatcaaaatttgaattttaaaacatattatttccaccttcttcctcactatgttatttctctcttcctcatttctgtctgccattcccacccttccat 122  Q
    ||||||||||||| || ||||||||||||| |||||||||| ||||||| |||||| ||||||||||| | |||||||    |||| ||||||||  |||    
T  5975463 atcatcaaaatttaaaatttaaaacatattctttccaccttgttcctcattatgttctttctctcttctttatttctg----ccatgcccaccctctcat 5975368  T
Q  123 agctttgcacgctaacaccaaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcaga 222  Q
    ||||| || | ||||||||||||| ||||||  || ||||||||||||| | ||||||||||||||||||||||||||||||  |||| ||||||||| |    
T  5975367 agctt-gcgccctaacaccaaaaatccattttcttcaacaatgtcttctcagtccatttgtcaatcatcatcaaatgagttgttaatatgtggttgcaaa 5975269  T
Q  223 aaaaattatgatgatgt 239  Q
    ||||||||||| |||||    
T  5975268 aaaaattatgaggatgt 5975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 41385452 - 41385379
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatga 233  Q
    ||||||||||||| ||||||||  |||||||||||| |||||||| || ||  ||||||||| | ||||||||||    
T  41385452 aacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgca-acaaaattatga 41385379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 44815714 - 44815641
Alignment:
Q  142 aaaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtgg 215  Q
    ||||| ||| ||| || ||||||||||||| ||||||| | |||||| ||||||||||| ||||| ||| ||||    
T  44815714 aaaaaaccaattccttcaacaatgtcttctcattccatctctcaatcgtcatcaaatgacttgcctatatgtgg 44815641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 1134478 - 1134564
Alignment:
Q  159 aacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatgatgatgtccatctc 246  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||| |||||||||||| ||||| ||||||    
T  1134478 aacaatgtcttctcattccatttgtcaatcatcatcaaatcagttgcctatatgtggttgca-aaaaaattatgaggatgttcatctc 1134564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 19597638 - 19597549
Alignment:
Q  143 aaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatcatcaaatgagttgccaatacgtggttgcagaaaaaattatga 233  Q
    ||||||||| || || ||||||||||||| ||||||||  |||||||||||| |||||||| || ||  ||||||||| | ||||||||||    
T  19597638 aaaacccatctccttcaacaatgtcttctaattccattactcaatcatcatccaatgagttacctatgtgtggttgca-acaaaattatga 19597549  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 41282674 - 41282720
Alignment:
Q  147 cccatttcattgaacaatgtcttcttattccatttgtcaatcatcat 193  Q
    |||||||| || ||||||||||||| ||||||||| |||||||||||    
T  41282674 cccatttccttcaacaatgtcttctcattccatttctcaatcatcat 41282720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 41284131 - 41284083
Alignment:
Q  143 aaaacccatttcattgaacaatgtcttcttattccatttgtcaatcatc 191  Q
    |||||||||||| || |||||| |||||| ||||||||| |||||||||    
T  41284131 aaaacccatttccttcaacaatctcttctcattccatttctcaatcatc 41284083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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