View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_6 (Length: 556)

Name: NF0713_low_6
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_6
NF0713_low_6
[»] chr6 (11 HSPs)
chr6 (195-556)||(19544868-19545208)
chr6 (22-117)||(19545286-19545381)
chr6 (201-258)||(22395459-22395516)
chr6 (214-263)||(26587846-26587895)
chr6 (386-505)||(7680381-7680500)
chr6 (215-258)||(14746620-14746663)
chr6 (31-94)||(22395621-22395684)
chr6 (33-117)||(20733384-20733468)
chr6 (26-102)||(27852027-27852104)
chr6 (214-263)||(26588163-26588212)
chr6 (31-107)||(14746424-14746500)
[»] chr4 (29 HSPs)
chr4 (195-556)||(18554444-18554784)
chr4 (200-550)||(13268074-13268408)
chr4 (22-117)||(18554862-18554957)
chr4 (29-117)||(13267886-13267974)
chr4 (29-115)||(13235113-13235199)
chr4 (386-548)||(30274903-30275065)
chr4 (29-105)||(20872382-20872460)
chr4 (29-115)||(12230693-12230774)
chr4 (29-117)||(13559511-13559599)
chr4 (29-113)||(22201298-22201384)
chr4 (200-264)||(13559360-13559424)
chr4 (200-260)||(15870945-15871005)
chr4 (200-263)||(12230863-12230926)
chr4 (29-117)||(15888680-15888759)
chr4 (200-257)||(19727534-19727591)
chr4 (26-117)||(10057496-10057587)
chr4 (215-258)||(17419551-17419594)
chr4 (41-117)||(9886806-9886885)
chr4 (386-507)||(16714075-16714196)
chr4 (29-117)||(15871105-15871183)
chr4 (200-260)||(15888520-15888580)
chr4 (215-253)||(9886991-9887029)
chr4 (215-255)||(20872219-20872259)
chr4 (329-385)||(30275045-30275101)
chr4 (213-292)||(18551033-18551111)
chr4 (456-502)||(17339375-17339421)
chr4 (215-264)||(13235293-13235342)
chr4 (33-117)||(18453632-18453717)
chr4 (215-263)||(30275171-30275219)
[»] scaffold0094 (2 HSPs)
scaffold0094 (195-556)||(2224-2563)
scaffold0094 (22-117)||(2641-2736)
[»] chr2 (13 HSPs)
chr2 (203-556)||(18984992-18985329)
chr2 (22-113)||(18985377-18985468)
chr2 (29-113)||(22497352-22497439)
chr2 (29-117)||(26861358-26861446)
chr2 (386-533)||(23212010-23212156)
chr2 (214-292)||(26861178-26861256)
chr2 (26-117)||(34858332-34858423)
chr2 (26-117)||(34873394-34873485)
chr2 (200-263)||(29718092-29718155)
chr2 (28-102)||(27473279-27473354)
chr2 (29-83)||(13361850-13361904)
chr2 (215-279)||(18784118-18784182)
chr2 (223-263)||(22497195-22497234)
[»] chr8 (16 HSPs)
chr8 (214-387)||(10453942-10454116)
chr8 (386-507)||(26858958-26859079)
chr8 (386-513)||(10453848-10453964)
chr8 (214-269)||(15727826-15727881)
chr8 (29-117)||(10454229-10454318)
chr8 (26-117)||(22237190-22237281)
chr8 (32-113)||(1683100-1683182)
chr8 (26-102)||(19807548-19807625)
chr8 (36-106)||(15727628-15727699)
chr8 (472-510)||(15728067-15728105)
chr8 (29-106)||(19862151-19862229)
chr8 (29-106)||(19866788-19866866)
chr8 (226-275)||(19862363-19862412)
chr8 (226-275)||(19867000-19867049)
chr8 (30-83)||(26859384-26859437)
chr8 (29-89)||(24678453-24678513)
[»] scaffold0290 (2 HSPs)
scaffold0290 (22-117)||(11993-12088)
scaffold0290 (203-255)||(11838-11890)
[»] chr7 (13 HSPs)
chr7 (386-513)||(48379123-48379250)
chr7 (386-513)||(13773603-13773730)
chr7 (29-117)||(11800121-11800209)
chr7 (29-117)||(9693134-9693222)
chr7 (200-264)||(9692983-9693047)
chr7 (200-258)||(16068058-16068116)
chr7 (386-435)||(15864949-15864998)
chr7 (426-548)||(2243260-2243381)
chr7 (32-117)||(16379171-16379257)
chr7 (29-102)||(11091471-11091545)
chr7 (243-314)||(15865053-15865124)
chr7 (345-387)||(15864976-15865018)
chr7 (251-314)||(48379008-48379071)
[»] chr3 (25 HSPs)
chr3 (386-512)||(17958927-17959053)
chr3 (29-117)||(22161611-22161699)
chr3 (386-513)||(14057445-14057572)
chr3 (390-513)||(16932729-16932852)
chr3 (29-113)||(10302610-10302694)
chr3 (29-117)||(21999416-21999504)
chr3 (31-117)||(10340938-10341024)
chr3 (29-117)||(21976985-21977073)
chr3 (26-113)||(27868423-27868510)
chr3 (29-113)||(19186663-19186747)
chr3 (200-264)||(10302774-10302838)
chr3 (386-533)||(14479250-14479397)
chr3 (26-117)||(52988998-52989089)
chr3 (386-507)||(16928759-16928880)
chr3 (214-263)||(19186851-19186900)
chr3 (216-264)||(10341127-10341175)
chr3 (29-117)||(16357977-16358056)
chr3 (200-260)||(21977160-21977220)
chr3 (200-260)||(21999591-21999651)
chr3 (200-260)||(22161786-22161846)
chr3 (214-263)||(16357816-16357864)
chr3 (31-116)||(21028662-21028748)
chr3 (214-263)||(16928619-16928668)
chr3 (241-277)||(14479486-14479522)
chr3 (243-314)||(17959107-17959178)
[»] chr1 (14 HSPs)
chr1 (386-510)||(51624630-51624754)
chr1 (386-548)||(10390166-10390328)
chr1 (29-94)||(15544162-15544227)
chr1 (29-117)||(17451271-17451362)
chr1 (216-264)||(21496633-21496681)
chr1 (26-117)||(21995804-21995895)
chr1 (472-519)||(24852447-24852494)
chr1 (214-263)||(17451474-17451523)
chr1 (229-263)||(15545327-15545361)
chr1 (453-507)||(43154161-43154215)
chr1 (57-94)||(21496450-21496487)
chr1 (29-117)||(31344038-31344127)
chr1 (227-276)||(43154372-43154421)
chr1 (472-508)||(15545554-15545590)
[»] scaffold0003 (2 HSPs)
scaffold0003 (386-513)||(132913-133040)
scaffold0003 (243-314)||(132790-132861)
[»] scaffold0091 (2 HSPs)
scaffold0091 (386-512)||(31380-31506)
scaffold0091 (243-314)||(31256-31327)
[»] scaffold0063 (2 HSPs)
scaffold0063 (386-513)||(25846-25973)
scaffold0063 (243-314)||(26014-26085)
[»] scaffold0385 (2 HSPs)
scaffold0385 (29-117)||(16012-16100)
scaffold0385 (200-263)||(16200-16263)
[»] scaffold0118 (2 HSPs)
scaffold0118 (29-117)||(11835-11924)
scaffold0118 (200-249)||(12011-12060)
[»] scaffold0218 (2 HSPs)
scaffold0218 (386-513)||(16727-16854)
scaffold0218 (243-315)||(16604-16676)
[»] chr5 (16 HSPs)
chr5 (383-533)||(24829661-24829811)
chr5 (29-117)||(23909047-23909135)
chr5 (32-117)||(13938830-13938917)
chr5 (33-117)||(14137821-14137906)
chr5 (206-258)||(25756303-25756355)
chr5 (200-278)||(14138005-14138083)
chr5 (200-258)||(25791883-25791941)
chr5 (199-261)||(32948866-32948927)
chr5 (386-507)||(13939172-13939293)
chr5 (407-532)||(14138192-14138315)
chr5 (214-260)||(25581329-25581374)
chr5 (214-263)||(13939029-13939078)
chr5 (31-117)||(25791694-25791782)
chr5 (453-509)||(23949805-23949861)
chr5 (215-263)||(24564977-24565025)
chr5 (42-107)||(25581498-25581565)
[»] scaffold0364 (1 HSPs)
scaffold0364 (199-264)||(14617-14682)
[»] scaffold0395 (1 HSPs)
scaffold0395 (23-117)||(11707-11801)
[»] scaffold0207 (1 HSPs)
scaffold0207 (199-260)||(737-797)
[»] scaffold0032 (1 HSPs)
scaffold0032 (26-116)||(68118-68208)
[»] scaffold0153 (2 HSPs)
scaffold0153 (26-103)||(5121-5199)
scaffold0153 (26-103)||(12141-12219)
[»] scaffold0686 (1 HSPs)
scaffold0686 (29-117)||(1263-1351)
[»] scaffold0074 (1 HSPs)
scaffold0074 (26-117)||(1759-1850)
[»] scaffold0408 (2 HSPs)
scaffold0408 (215-258)||(15055-15098)
scaffold0408 (31-117)||(14860-14946)
[»] scaffold1043 (1 HSPs)
scaffold1043 (200-258)||(516-574)
[»] scaffold0174 (1 HSPs)
scaffold0174 (26-115)||(13458-13547)
[»] scaffold0381 (2 HSPs)
scaffold0381 (41-117)||(11659-11738)
scaffold0381 (215-253)||(11515-11553)
[»] scaffold0149 (1 HSPs)
scaffold0149 (214-292)||(35443-35520)
[»] scaffold0048 (1 HSPs)
scaffold0048 (391-533)||(54490-54631)
[»] scaffold0010 (1 HSPs)
scaffold0010 (200-258)||(143158-143216)
[»] scaffold0670 (1 HSPs)
scaffold0670 (213-292)||(6503-6581)
[»] scaffold0035 (1 HSPs)
scaffold0035 (226-275)||(15389-15438)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 195 - 556
Target Start/End: Complemental strand, 19545208 - 19544868
Alignment:
Q  195 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  19545208 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattccagttttggcttgatt 19545109  T
Q  295 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||              
T  19545108 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagagtgacccttctaactcctaatgtttct---------- 19545019  T
Q  395 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 494  Q
               |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545018 -----------atttataattgggtcaatcacttgttataattttctcctcctctattcactattattttactcatcccctcccccacttatttgaaact 19544930  T
Q  495 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaa 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19544929 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaa 19544868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 19545381 - 19545286
Alignment:
Q  22 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19545381 catcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 19545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 22395516 - 22395459
Alignment:
Q  201 agacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    |||||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||    
T  22395516 agacaaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttac 22395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 26587846 - 26587895
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  26587846 atcatagattaagataccctaaagtgaaaagattctcccctttacctcga 26587895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 7680500 - 7680381
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||| |||  |||||||||||| | ||| |  ||||||||||  ||| ||| |   |||| |||||||| |||||| | ||||||||||||||||    
T  7680500 ttctaactcttaacctttctatttatattagggccggtcacttgttaagattctcttccactctactcactattcttttacacttcccctcccccactta 7680401  T
Q  486 tttgaaacttatattctaca 505  Q
    ||| ||||||||||||||||    
T  7680400 tttaaaacttatattctaca 7680381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 14746620 - 14746663
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  14746620 tcatagattaagataccctatagtgcaaagattctcccccttac 14746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 22395684 - 22395621
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa 94  Q
    ||||||||||||||||||||  || |||||||||||  ||||| ||||||||||||||||||||    
T  22395684 cctatcattcaaacactaatcatttgttaacctaccggattattcactctttttaagactaaaa 22395621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 20733468 - 20733384
Alignment:
Q  33 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    |||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  20733468 tatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 20733384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 27852027 - 27852104
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 102  Q
    ||||||||||||||  |||||||||| ||| | |||||||  ||||||||||||||||||| |||| |||||||||||    
T  27852027 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaatactagaaactcaattc 27852104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 26588163 - 26588212
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||||||||||||||||||||||| || ||  ||||||||||||||||    
T  26588163 atcatagattaagataccctaaagtgaaaggaacctcccccttacctcga 26588212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 14746424 - 14746500
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaa 107  Q
    ||||||||| ||||||||||  || |||||||||||  ||| | ||||||||| |||||||||| |||||| |||||    
T  14746424 cctatcattaaaacactaatcatttgttaacctaccgaattgttcactcttttcaagactaaaattcaattaaaaaa 14746500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 195 - 556
Target Start/End: Complemental strand, 18554784 - 18554444
Alignment:
Q  195 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  18554784 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgatcccttcgaaaattccagctttggcttgatt 18554685  T
Q  295 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||              
T  18554684 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacaatcaacaagagtgacccttctaactcctaatgtttct---------- 18554595  T
Q  395 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 494  Q
               |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18554594 -----------atttataattgggtcaatcacttgttataattttctcctcctctattcactattattttactcatcccctcccccagttatttgaaact 18554506  T
Q  495 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaa 556  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18554505 tatattctacacctccaacactattttattttgttttgatgcctctctttatttaaaataaa 18554444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 200 - 550
Target Start/End: Original strand, 13268074 - 13268408
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgattccgtc 299  Q
    |||| |||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  13268074 aagaaaaccctcccatcataaattaagataccctaaagtgcaaagattctcccccttacctcgattcccttgaaaattccagctttggcttgattccgtc 13268173  T
Q  300 gcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactcctaat 399  Q
     ||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||  || |||||||||| || ||||||||||                   
T  13268174 ccagctagggtttctccttttctcctaccctcttctctattttccacgttgagcaaaagtaacccttctaattcataatgtttct--------------- 13268258  T
Q  400 gtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatat 499  Q
          |||||||| ||||||||||||||||||||||| ||| ||| ||  ||||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  13268259 ------atttataagtgggtcaatcacttgttataattttcttctcctccgttcactattcttttactcctcccctctcccacttatttgaaacttatat 13268352  T
Q  500 tctacacctccgacactatt-----ttattttgttttgatgcctctctttatttaa 550  Q
    ||||||||||||||||||||     || |||||||||||| | |||||||||||||    
T  13268353 tctacacctccgacactattttttatttttttgttttgattcatctctttatttaa 13268408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 18554957 - 18554862
Alignment:
Q  22 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18554957 catcatcaccctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagactaaaactcaattcaaaaacctaaactag 18554862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 13267886 - 13267974
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||| ||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  13267886 accctatcattcaaaaactaattcttcgttaacctacctgattatccactttttttaagactaaaactcaattcaaaaatctaaactag 13267974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 13235113 - 13235199
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaact 115  Q
    ||||||||||||| ||||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||    
T  13235113 accctatcattcatacactaattattcgttaacctaccgaaatatccactctttttaagactaaaactcaattcaaaaacctaaact 13235199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 386 - 548
Target Start/End: Complemental strand, 30275065 - 30274903
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||||||||||||||| ||||| ||||| ||  |||||| ||||||  | | ||| |||||||| |||| |||||||   |||||||||||||||    
T  30275065 ttctaactcctaatgtttctacttatatttgggccagccacttgctataatcattttctcctctattcagtattcttttacttcccccctcccccactta 30274966  T
Q  486 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttattt 548  Q
    ||| ||||||||||||||||||| |||| |||| ||||||| ||||||| |||| ||| ||||    
T  30274965 tttaaaacttatattctacaccttcgactctatattattttattttgattcctcccttcattt 30274903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 20872460 - 20872382
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaag--actaaaactcaattcaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |  |||||||||||||||    
T  20872460 accctatcattcaaacactaattcttcgttaacctaccagattatccactctttttaagtcaaaaaaactcaattcaaa 20872382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 12230693 - 12230774
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaact 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||     |||||| ||||||||||||| ||||||    
T  12230693 accctatcattcaaacactaattcttcgttaacctaccagattatccactctttt-----ctaaaattcaattcaaaaacataaact 12230774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 13559599 - 13559511
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||| || |||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  13559599 accctatcattcaaataccaattattcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 13559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 22201298 - 22201384
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaacctaaa 113  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||  |  |||||| ||||||||||||||||    
T  22201298 accctatcatttaaacactaattcttcgttaacctaccagattatcaactctttttaaggttaaaaaacttaattcaaaaacctaaa 22201384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 13559424 - 13559360
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  13559424 aagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttacctcgat 13559360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 15871005 - 15870945
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||    
T  15871005 aagacaaccctcccatcataaattaagataccctaaagtgcaaagattctcccccttacct 15870945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 12230863 - 12230926
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  12230863 aagacaaccctcccataatagattaagataccctaaagtgcaaagattatcccccttacctcga 12230926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 15888759 - 15888680
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  15888759 accctatcattgaaacactaattcttcgttaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 15888680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 19727591 - 19727534
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctccccctta 257  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||    
T  19727591 aagacaaccctcccgtcatagattaagataccctaaagtgcaaagattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 10057496 - 10057587
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||  ||| |||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  10057496 atcaccctatcattataactctaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 10057587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 17419551 - 17419594
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  17419551 tcatagattaagataccctaaagtgcaaagattcttccccttac 17419594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 9886806 - 9886885
Alignment:
Q  41 aaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 117  Q
    |||||||||||||| |||||| ||||  ||||||||||| ||||||| ||   |||||||||||||||||| ||||||||    
T  9886806 aaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 9886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 507
Target Start/End: Original strand, 16714075 - 16714196
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||| ||||||||||||| | |||  | ||||||||| ||||| |   ||| |||| |||||||| |||||||    ||||||||||||||    
T  16714075 ttctaacttctaaggtttctatttatattcgggaaagtcacttgttgtaattcttatctcctctactcactattcttttacttcctccctcccccactta 16714174  T
Q  486 tttgaaacttatattctacacc 507  Q
    ||| ||||||||||| ||||||    
T  16714175 tttaaaacttatattatacacc 16714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 15871183 - 15871105
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||| |||||||||||||| |||||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  15871183 accctatcattgaaacactaattctt-gttaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 15871105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 15888580 - 15888520
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    ||||||||||||  |||||| ||| ||||| |||||||||||||||||||||| |||||||    
T  15888580 aagacaaccctcccatcataaatttagatatcctaaagtgcaaagattctccctcttacct 15888520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 9886991 - 9887029
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccc 253  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9886991 tcatatattaagataccctaaagtgcaaagattctcccc 9887029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 20872259 - 20872219
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctccccct 255  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  20872259 tcatatattaagatacccaaaagtgcaaagattctccccct 20872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 30275101 - 30275045
Alignment:
Q  329 ctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttcta 385  Q
    |||||||||  |||| |||||||||||  ||||| ||||||||||||||||||||||    
T  30275101 ctcttctcttgtttctacgttcaacaaaagtgacacttctaactcctaatgtttcta 30275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 18551111 - 18551033
Alignment:
Q  213 tatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 292  Q
    ||||||||||||| | |||||||||||  |  | ||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  18551111 tatcatagattaa-acaccctaaagtggtagtaatctcccccttacctcgaatccttcgaaaaatctggttttggcttga 18551033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 502
Target Start/End: Original strand, 17339375 - 17339421
Alignment:
Q  456 tattattttactcatcccctcccccacttatttgaaacttatattct 502  Q
    |||| |||||| | ||||||||||||||||||| |||||||||||||    
T  17339375 tattcttttacacctcccctcccccacttatttaaaacttatattct 17339421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 13235293 - 13235342
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    ||||| ||||| |||||||||||||||||||||| |||  ||||||||||    
T  13235293 tcataaattaatataccctaaagtgcaaagattcccccgtttacctcgat 13235342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 18453632 - 18453717
Alignment:
Q  33 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaactag 117  Q
    |||||||| ||||||||| || | |||||| | | ||||||| || ||||||||| ||| | ||||||||||||| ||||||||||    
T  18453632 tatcattccaacactaatcctccattaacccatcttattatctacactttttaagtctatagactcaattcaaaaccctaaactag 18453717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 30275219 - 30275171
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||||| |||| |||||||||||| || ||||||||| ||||||||||    
T  30275219 tcatagaataagttaccctaaagtgaaatgattctcccacttacctcga 30275171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 195 - 556
Target Start/End: Complemental strand, 2563 - 2224
Alignment:
Q  195 attaaaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgatt 294  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  2563 attaaaatataaccctcatatcatagattaagataccctaaa-tgcaaagattctcccccttacctcgattcctttgaaaattccagctttggcttgatt 2465  T
Q  295 ccgtcgcagctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactc 394  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||              
T  2464 ccgtcacagctagggtttctccttttctcctcccctcttctctattttcaacgttcagcaaaagtgacccttataactcctaatgtttct---------- 2375  T
Q  395 ctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaact 494  Q
               |||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2374 -----------atttataattgggtcaatcacttgttataattttctcctcctctgttcactattattttactcatcccctcccccacttatttgaaact 2286  T
Q  495 tatattctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaa 556  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  2285 tatattctacacctccgacactattttattttgttttgattcctctccttatttaaaataaa 2224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 2736 - 2641
Alignment:
Q  22 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2736 catcatcaccctattattcaaacactaattcttcgttaacctgccagattatccactctttttaagactaaaactcaattcaaaaacttaaactag 2641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 163; Significance: 8e-87; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 203 - 556
Target Start/End: Complemental strand, 18985329 - 18984992
Alignment:
Q  203 acaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttgattccgtcgca 302  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||| | |||| |||||||||||| |||    
T  18985329 acaaccctcctatcatagattacgataccctaatgtgcaaagattctcccccttatctcgattccttcgcaaattccaactttagcttgattccgttgca 18985230  T
Q  303 gctagggtttctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctattctaactcctaatgtt 402  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||| |||||||||||||                      
T  18985229 gctagggtttctccttttctcctcccctcttctctattttccacgttcaacaaaagcgacccttctaaatcctaatgtttct------------------ 18985148  T
Q  403 tctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttact-----catcccctcccccacttatttgaaacttat 497  Q
       |||||||||||||||||||||||||||||||| |||  || | | ||||||||| |||||||     | ||||||||||||||||||||||||||||    
T  18985147 ---atttataattgggtcaatcacttgttataattttcttatccttttttcactattcttttactcctcccctcccctcccccacttatttgaaacttat 18985051  T
Q  498 attctacacctccgacactattttattttgttttgatgcctctctttatttaaaataaa 556  Q
    |||||||||| ||||||||||||||| |||||||||| |||| |||||||||| |||||    
T  18985050 attctacacccccgacactattttatcttgttttgattcctcactttatttaatataaa 18984992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 18985468 - 18985377
Alignment:
Q  22 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 113  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||    
T  18985468 catcatcaacctatcattcaaacactaattcttcgttaacctaccagattgtccactctttttaaaactaaaactcaattcgaaaacctaaa 18985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 22497439 - 22497352
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaa 113  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||   |||||||||||||||||||||||    
T  22497439 accctattattcaaacactaattcttcgtcaacctaccatattatccactccttttaaggctaaaaaaactcaattcaaaaacctaaa 22497352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 26861446 - 26861358
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 117  Q
    |||||||| ||  |||| ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26861446 accctatcgttagaacattaattcttcattaacctaccagattatccactctttttaagactaaaaactcaattc-aaaacctaaactag 26861358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 533
Target Start/End: Original strand, 23212010 - 23212156
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||||||||  |||||||||||| | |||||  ||||||||||  ||| ||| | | |||| |||||||| |||||||| |||| ||||||  |||    
T  23212010 ttctaactcctaacttttctatttatattggggtcggtcacttgttaagattctcttcccctctactcactattcttttactcctcccatccccc-ttta 23212108  T
Q  486 tttgaaacttatattctacacctccgacactattttattttgttttga 533  Q
    ||| |||||||||||||||||| ||||| |||  ||||||| ||||||    
T  23212109 tttaaaacttatattctacacccccgactctacgttattttattttga 23212156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 26861256 - 26861178
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 292  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | | ||||||||||    
T  26861256 atcatggattaagataccctaaagtgcaaagaatctcccccttacctcgaatcctttgaaaaatatggttttggcttga 26861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 34858423 - 34858332
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  34858423 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 34858332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 34873485 - 34873394
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  34873485 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 34873394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 29718155 - 29718092
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||||||||   ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  29718155 aagacaacccttccatcatagattaagatactctaaagtgcaaatattctcccccttacctcga 29718092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 27473279 - 27473354
Alignment:
Q  28 caccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 102  Q
    ||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||    
T  27473279 caccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 27473354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 13361850 - 13361904
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttt 83  Q
    ||||||||||   |||||||||||| | ||||||||||| |||||||||||||||    
T  13361850 accctatcatcgtaacactaattctccattaacctaccagattatccactctttt 13361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 18784182 - 18784118
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattct 279  Q
    ||||||| ||| ||||||||| ||| | |||||||||||||||| || | |||||| ||||||||    
T  18784182 tcatagaataaaataccctaacgtgaagagattctcccccttacatcaaatccttcaaaaattct 18784118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 22497234 - 22497195
Alignment:
Q  223 taagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  22497234 taagataccctaa-gtgcaaagattctcccccttagctcga 22497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 214 - 387
Target Start/End: Complemental strand, 10454116 - 10453942
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattct-agctttggcttgattccgtcgcagctagggttt 312  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| || | ||||| | ||||||||||||||| ||||||| |||||||||    
T  10454116 atcatagattaagataccctaaagttcaaagattcttccccttacctcgattcttttggaaattttcagctttggcttgatttcgtcgcaactagggttt 10454017  T
Q  313 ctccttttctcctcccctcttctctattttcaacgttcaacaagggtgacccttctaactcctaatgtttctatt 387  Q
    |||||| |||||||| ||||||||  ||||  ||| |||||||  ||||||||||||||||||||||||||||||    
T  10454016 ctccttatctcctcctctcttctccctttttcacggtcaacaaaagtgacccttctaactcctaatgtttctatt 10453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 386 - 507
Target Start/End: Complemental strand, 26859079 - 26858958
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||||||||  |||||||||||| ||||| |  ||||||||||  ||| ||| ||| |||| |||||||| |||||||| |||||||| |||||||    
T  26859079 ttctaactcctaacctttctatttatatttgggccggtcacttgttaagattctcttctcctctactcactattcttttactcctcccctcctccactta 26858980  T
Q  486 tttgaaacttatattctacacc 507  Q
    ||| ||||||||||||||||||    
T  26858979 tttaaaacttatattctacacc 26858958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 513
Target Start/End: Complemental strand, 10453964 - 10453848
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||  || ||||           ||||||||| ||||||||||||||    
T  10453964 ttctaactcctaatgtttctatttatatttgggtcagtcacttgttataattttcttttcctcta-----------tttactcataccctcccccactta 10453876  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| |||||||||| |||||||||||||    
T  10453875 tttaaaacttatatcctacacctccgac 10453848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 15727826 - 15727881
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattcctt 269  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||| |||||    
T  15727826 atcatagattaagataccctaaagtgtaaggattctcccccttacctcgaatcctt 15727881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 10454318 - 10454229
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 117  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||||| | ||| |||| | || ||||||||||||||||||| |||||||    
T  10454318 accctatcatccaaacactacttcttcattaacctaccagattatctattctctttagggctaaaaactcaattcaaaaaccgaaactag 10454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 22237281 - 22237190
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||  ||||| |||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  22237281 atcaccctatcattataacaccaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 22237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 1683100 - 1683182
Alignment:
Q  32 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaa 113  Q
    |||||||||||||||||||||||| ||||||||||| ||  || | |||||| ||| ||||| ||||||||| ||||||||||    
T  1683100 ctatcattcaaacactaattcttctttaacctaccagatcgtctaatcttttaaaggctaaacactcaattcgaaaacctaaa 1683182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 19807625 - 19807548
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 102  Q
    |||||||| |||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||    
T  19807625 atcaccctgtcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc 19807548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 15727628 - 15727699
Alignment:
Q  36 cattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaa 106  Q
    |||||||||| || |  ||||||||||||||  |||||||||||||||||||| | ||||||||||||||||    
T  15727628 cattcaaacattagtcattcgttaacctaccggattatccactctttttaagaataaaaactcaattcaaaa 15727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 510
Target Start/End: Original strand, 15728067 - 15728105
Alignment:
Q  472 ccctcccccacttatttgaaacttatattctacacctcc 510  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  15728067 ccctcccccacttatttaaaacttatattctacacctcc 15728105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 19862151 - 19862229
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaa 106  Q
    |||||| |||||||||| ||||||| ||||||||||||  |||||| |  ||||||||| ||| | |||||||||||||    
T  19862151 accctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaaggctatagactcaattcaaaa 19862229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 19866788 - 19866866
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaa 106  Q
    |||||| |||||||||| ||||||| ||||||||||||  |||||| |  ||||||||| ||| | |||||||||||||    
T  19866788 accctaacattcaaacattaattctccgttaacctacctaattatctaacctttttaaggctatagactcaattcaaaa 19866866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 19862363 - 19862412
Alignment:
Q  226 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 275  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  19862363 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 19862412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 19867000 - 19867049
Alignment:
Q  226 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 275  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  19867000 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 19867049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 26859437 - 26859384
Alignment:
Q  30 ccctatcattcaaacactaattcttcgttaacctaccatattatccactctttt 83  Q
    ||||||||||  ||||| |||||||| ||||||||||  |||||||||||||||    
T  26859437 ccctatcattagaacaccaattcttcattaacctacccgattatccactctttt 26859384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 24678513 - 24678453
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagac 89  Q
    |||||||||||| |||||||||||| | ||||||||||  |||||| |  |||||||||||    
T  24678513 accctatcattccaacactaattctccattaacctacctaattatctatcctttttaagac 24678453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 12088 - 11993
Alignment:
Q  22 catcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12088 catcatcaacctataattcaaacactaattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcaaaaacctaaactag 11993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 11890 - 11838
Alignment:
Q  203 acaaccctcatatcatagattaagataccctaaagtgcaaagattctccccct 255  Q
    ||||||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  11890 acaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccct 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 48379123 - 48379250
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  48379123 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 48379222  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||||||||    
T  48379223 tttaaaacttatattctacacctccgac 48379250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 386 - 513
Target Start/End: Complemental strand, 13773730 - 13773603
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||||||||| ||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||||||||||| |||    
T  13773730 ttctaacttctaatgtttccatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccattta 13773631  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||||||||    
T  13773630 tttaaaacttatattctacacctccgac 13773603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 11800209 - 11800121
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||| ||||| || ||||||    
T  11800209 accctatcattgaaacactaattcttctttaacctaccagattatccattctttttaagactaaaactctattaaaaaagcttaactag 11800121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 9693222 - 9693134
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||| || |||| ||| ||||||||||| ||||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  9693222 accctatcattcaaataccaattattcattaacctaccagattatccactcttttaaaggctaaaactcaattaaaaaacttaaactag 9693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 9693047 - 9692983
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    ||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  9693047 aagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttacctcgat 9692983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 16068116 - 16068058
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    ||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||    
T  16068116 aagacaaccctcccgtcatagattaagataccctaaattgcaaagattctcccccttac 16068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 15864998 - 15864949
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataa 435  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  15864998 ttctaactcctaatgtttctatttatacttgggtcaatcacatgttataa 15864949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 2243260 - 2243381
Alignment:
Q  426 cttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatattctacacctccgacactattttattt 525  Q
    ||||||| |||| ||| ||| |||| |||||||| |||||||| |||||| ||||||||||||  ||||||||||||| |||  |||| |||| || |||    
T  2243260 cttgttacaattttcttctcctctactcactattcttttactcctccccttccccacttatttagaacttatattctataccctcgactctatatt-ttt 2243358  T
Q  526 tgttttgatgcctctctttattt 548  Q
    | ||||||  |||||||| ||||    
T  2243359 tattttgaatcctctcttcattt 2243381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 16379257 - 16379171
Alignment:
Q  32 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa-ctcaattcaaaaacctaaactag 117  Q
    |||||||| ||||||| ||  || ||||||||||   |||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  16379257 ctatcattaaaacacttatcgtttgttaacctactggattagccactctttttaaaactaaaaactcaattcaaaaacctaaactag 16379171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 11091471 - 11091545
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattc 102  Q
    |||||||||||  |||||||||| ||| | ||||||   |||||||||||||||||||||||| |||||||||||    
T  11091471 accctatcattataacactaattattcatcaacctaatgtattatccactctttttaagactagaaactcaattc 11091545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 15865124 - 15865053
Alignment:
Q  243 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 314  Q
    ||||||||||||||||||||||| |||| |||| ||||||| |||| ||||| |||| ||| |||||||||||    
T  15865124 agattctcccccttacctcgatttcttctgaaatttctagc-ttggtttgatcccgttgcaactagggtttct 15865053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 15865018 - 15864976
Alignment:
Q  345 acgttcaacaagggtgacccttctaactcctaatgtttctatt 387  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  15865018 acgttcaacaaaagtgactcttctaactcctaatgtttctatt 15864976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 48379008 - 48379071
Alignment:
Q  251 ccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 314  Q
    ||||||||||||||| |||| |||| ||| ||||| |||||||| |||||||| |||||||||||    
T  48379008 ccccttacctcgatttcttctgaaatttccagctt-ggcttgatcccgtcgcaactagggtttct 48379071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 386 - 512
Target Start/End: Complemental strand, 17959053 - 17958927
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  17959053 ttctaactcctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 17958954  T
Q  486 tttgaaacttatattctacacctccga 512  Q
    ||| ||||||||||| |||||||||||    
T  17958953 tttaaaacttatattatacacctccga 17958927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 22161611 - 22161699
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22161611 accctatcattcaaacactaattcttcattaacctacctgattatccactctttttaagactaaaactcaattcaaaaacctaaactag 22161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 386 - 513
Target Start/End: Complemental strand, 14057572 - 14057445
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||||||||||||||||||||  ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  14057572 ttctaactcctaatgtttctatttatgcttgggtcaatcacatgttataaatttcttctcctttattcactatacttttactcctcccctcccccactta 14057473  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||| ||||    
T  14057472 tttaaaacttatattctacaccttcgac 14057445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 390 - 513
Target Start/End: Complemental strand, 16932852 - 16932729
Alignment:
Q  390 aactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttg 489  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| | | | ||| | ||||||||||  |||||||| |||||||||||||||||||     
T  16932852 aactcctaatgtttctatttatacttgggtcaatcacatgttataacttttttctcctttattcactatacttttactcttcccctcccccacttattta 16932753  T
Q  490 aaacttatattctacacctccgac 513  Q
    ||||||||||||||||||||||||    
T  16932752 aaacttatattctacacctccgac 16932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 10302610 - 10302694
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  10302610 accctatcattcaaacactaattcttcgttaacctaccagattatccactcttttaaagactaaaactcaattcaaaaacttaaa 10302694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 21999416 - 21999504
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||| ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21999416 accctgtcattcaaacactaattcttcattaacctacctgattatccactctttttaagactaaaactcaattcaaaaacctaaactag 21999504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 10340938 - 10341024
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10340938 cctatcattcaaacactaattcttcgttaacctaccggattatccactcttttaaagactaaaactcaattcaaaaacttaaactag 10341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 21976985 - 21977073
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21976985 accctgtcattcaaacactaattcttcattaacctacctgattatccactcttttaaagactaaaactcaattcaaaaacctaaactag 21977073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 27868510 - 27868423
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 113  Q
    |||| |||||||||||||||  |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||    
T  27868510 atcaacctatcattcaaacatcaattcttcgttaacctaccagattatccactctttttaaaactaaaactcaattcgaaaacctaaa 27868423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 19186663 - 19186747
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaa 113  Q
    |||||||||||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||||||||||||||||| ||||    
T  19186663 accctatcattcaaacactaattctttgttaacctacctgattacccactcttttcaagactaaaactcaattcaaaaacttaaa 19186747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 10302774 - 10302838
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  10302774 aagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccgtacttcgat 10302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 533
Target Start/End: Complemental strand, 14479397 - 14479250
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    ||||||||| |||  |||||||||||| | ||| | | |||||| ||  ||| ||| | | |||| |||||||| |||||||| ||||||||||| ||||    
T  14479397 ttctaactcttaacctttctatttatattagggccgaccacttgctaagattctcttcccctctactcactattcttttactcttcccctcccccgctta 14479298  T
Q  486 tttgaaacttatattctacacctccgacactattttattttgttttga 533  Q
    ||| |||||||||||||||||| ||||| |||  ||||||| ||||||    
T  14479297 tttaaaacttatattctacacccccgactctacgttattttattttga 14479250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 52989089 - 52988998
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  52989089 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 52988998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 507
Target Start/End: Original strand, 16928759 - 16928880
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||| ||||||  |||||||||||| | |||||  ||||||||||  ||| |||  |  |||| ||| |||| |||||||| ||||||||||||||||    
T  16928759 ttctaattcctaacctttctatttatattagggtcggtcacttgttaagattctctttttctctactcattattcttttactcctcccctcccccactta 16928858  T
Q  486 tttgaaacttatattctacacc 507  Q
    | | ||||||||||||||||||    
T  16928859 tataaaacttatattctacacc 16928880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 19186851 - 19186900
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  19186851 atcataaattaagataccctaaagtgcaaagattctcctccttacctcga 19186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 10341127 - 10341175
Alignment:
Q  216 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  10341127 catagattaagataccctaaagtgcaaatattctcccccttacttcgat 10341175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 16358056 - 16357977
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||| |||||||||||||||| |||||||||  ||||||||||         ||||||||||||||||||||||||||||||    
T  16358056 accctatcattgaaacactaattcttcgctaacctacctgattatccact---------actaaaactcaattcaaaaacctaaactag 16357977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 21977160 - 21977220
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21977160 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 21977220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 21999591 - 21999651
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21999591 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 21999651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 22161786 - 22161846
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    |||||||||||   |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  22161786 aagacaacccttccatcataaattaagataccctaaagtgcaaagattctaccccttacct 22161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 16357864 - 16357816
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  16357864 atcataaattaagataccctaaagtgcaaagattct-ccccttacctcga 16357816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 21028662 - 21028748
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaa-actcaattcaaaaacctaaacta 116  Q
    |||||||||| |||||||||| | | ||||||||||  |||||  ||| |||||||| ||| | ||||||||||||| |||||||||    
T  21028662 cctatcattccaacactaattttccattaacctacctgattatatactatttttaaggctatagactcaattcaaaaccctaaacta 21028748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 16928619 - 16928668
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||||||||||||||  ||||||| ||| |||||| ||||||||||||    
T  16928619 atcatagattaagatactttaaagtgaaaatattctctcccttacctcga 16928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 14479522 - 14479486
Alignment:
Q  241 aaagattctcccccttacctcgattccttcgaaaatt 277  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  14479522 aaagattctcccccttacctcgaatccttcgagaatt 14479486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 17959178 - 17959107
Alignment:
Q  243 agattctcccccttacctcgattccttcgaaaa-ttctagctttggcttgattccgtcgcagctagggtttct 314  Q
    |||||||||||||||||| |||| |||| |||| ||| ||| ||| |||||| |||||||| |||||||||||    
T  17959178 agattctcccccttaccttgatttcttctaaaatttccagc-ttgacttgatcccgtcgcaactagggtttct 17959107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 386 - 510
Target Start/End: Complemental strand, 51624754 - 51624630
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| ||||||||||||||||    
T  51624754 ttctaactcctaatgtttatatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctcccccactta 51624655  T
Q  486 tttgaaacttatattctacacctcc 510  Q
    ||| |||||||||||||||||||||    
T  51624654 tttaaaacttatattctacacctcc 51624630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 386 - 548
Target Start/End: Original strand, 10390166 - 10390328
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||||||||  ||| |||||||| |  || |  ||||||||||  ||| ||||||| |||| |||||||| |||||||| |||||||||| |||||    
T  10390166 ttctaactcctaacctttgtatttatattaaggccggtcacttgttaagattctctgctcctctactcactattcttttactcctcccctccccaactta 10390265  T
Q  486 tttgaaacttatattctacacctccgacactattttattttgttttgatgcctctctttattt 548  Q
    ||| |||||||||||||||||| ||||| |||| ||||||| ||||||  |||| ||||||||    
T  10390266 tttaaaacttatattctacacccccgactctatgttattttattttgactcctccctttattt 10390328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 15544162 - 15544227
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaa 94  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||    
T  15544162 accctatcaatcaaacactaattctttgttaacctaccagattatccactctttttaaggctaaaa 15544227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 17451271 - 17451362
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||| ||   ||||||||| | |||||||||||||||    
T  17451271 accctatcattcaaacactaactcttagttaacctaccagattatccactatttttaaggctaaaaaaactcaacttaaaaacctaaactag 17451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 21496633 - 21496681
Alignment:
Q  216 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21496633 catagattaagataccctaaagtgcaaagattctcccccttacctcgat 21496681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 21995895 - 21995804
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    |||| |||||||||  |||||||||| ||| | |||||||  ||| |||||||||||||||||||| |||||||||||  |||||||||||||    
T  21995895 atcaacctatcattataacactaattattcatcaacctactgtatgatccactctttttaagactagaaactcaattc-gaaacctaaactag 21995804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 519
Target Start/End: Complemental strand, 24852494 - 24852447
Alignment:
Q  472 ccctcccccacttatttgaaacttatattctacacctccgacactatt 519  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  24852494 ccctcccccacttatttaaaacttatattctacacctctgactctatt 24852447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 17451474 - 17451523
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||| |||||||||||||||||||||||||||||  ||||| ||||||    
T  17451474 atcatatattaagataccctaaagtgcaaagattctatcccttccctcga 17451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 15545327 - 15545361
Alignment:
Q  229 accctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||||||||||||||||||| |||||||||||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcga 15545361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 507
Target Start/End: Complemental strand, 43154215 - 43154161
Alignment:
Q  453 cactattattttactcatcccctcccccacttatttgaaacttatattctacacc 507  Q
    ||||||| ||||||||   ||||||||||||||||| |||||||| |||||||||    
T  43154215 cactattcttttactccctccctcccccacttatttaaaacttattttctacacc 43154161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 21496450 - 21496487
Alignment:
Q  57 ttaacctaccatattatccactctttttaagactaaaa 94  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  21496450 ttaacctaccggattatccactctttttaagactaaaa 21496487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 31344038 - 31344127
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    |||||||||||| |||||||||||| | |||||||| |  |||||| | | |||||||| ||| | ||| ||||||||| ||||||||||    
T  31344038 accctatcattccaacactaattctccattaacctatccgattatctaatatttttaaggctatagactaaattcaaaaccctaaactag 31344127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 43154421 - 43154372
Alignment:
Q  227 ataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaat 276  Q
    ||||||||||||  | ||||||||||||||||||||| |||||| |||||    
T  43154421 ataccctaaagttaagagattctcccccttacctcgaatccttcaaaaat 43154372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 508
Target Start/End: Original strand, 15545554 - 15545590
Alignment:
Q  472 ccctcccccacttatttgaaacttatattctacacct 508  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  15545554 ccctcccccacttatttaaaacttatactctacacct 15545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 132913 - 133040
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||||||| |||||||    
T  132913 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccctccgccactta 133012  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||||||||    
T  133013 tttaaaacttatattctacacctccgac 133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 132790 - 132861
Alignment:
Q  243 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 314  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| ||||| || |||||||||||    
T  132790 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcacaactagggtttct 132861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 386 - 512
Target Start/End: Original strand, 31380 - 31506
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||||||||||||||||| ||||||||||||| |||||||| | ||| ||| | |||||| |||  |||||||| ||||||||||||||||    
T  31380 ttctaacttctaatgtttctatttatacttgggtcaatcacatgttataaatttcttctcctttattcaatatacttttactcctcccctcccccactta 31479  T
Q  486 tttgaaacttatattctacacctccga 512  Q
    ||| |||||||||||||||||||||||    
T  31480 tttaaaacttatattctacacctccga 31506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 31256 - 31327
Alignment:
Q  243 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 314  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||| | |||||||||||    
T  31256 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgtaactagggtttct 31327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 513
Target Start/End: Complemental strand, 25973 - 25846
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| |||||||||||||||||| |||||||||| || |||||||| | ||| ||| | || |||| ||  |||||||| ||||||||||||||||    
T  25973 ttctaacttctaatgtttctatttatacttgggtcaataacatgttataactttcttctcctttactcaccatacttttactcctcccctcccccactta 25874  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||||||||    
T  25873 tttaaaacttatattctacacctccgac 25846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 26085 - 26014
Alignment:
Q  243 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttct 314  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||||| |||||||||||    
T  26085 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgcaactagggtttct 26014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 16012 - 16100
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||| ||||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16012 accctatgattcaaacactaattcttcattaaactacctgattatccactctttttaagactaaaactcaattcaaaaacttaaactag 16100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 16200 - 16263
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||| ||||||  |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  16200 aagacgaccctcccatcataaattaagataccctaaagtacaaagattctcccccttacctcga 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 11835 - 11924
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 117  Q
    ||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  11835 accctatcattcaaacactaattcttcgtgaacctacttgattatccactctttttaagactaaaaactcaattcaaaaatctaaactag 11924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 12011 - 12060
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattct 249  Q
    ||||||||||||  |||||| ||||||||||||||||||||||| |||||    
T  12011 aagacaaccctcccatcataaattaagataccctaaagtgcaaatattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 16727 - 16854
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||| ||||||||||||||||||  | |||||||||| |||||||| | ||| ||| | ||||||||||  |||||||| |||| ||| |||||||    
T  16727 ttctaacttctaatgtttctatttatacgttggtcaatcacatgttataactttcttctcctttattcactatacttttactcctcccatcctccactta 16826  T
Q  486 tttgaaacttatattctacacctccgac 513  Q
    ||| ||||||||||||||||||| ||||    
T  16827 tttaaaacttatattctacaccttcgac 16854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 16604 - 16676
Alignment:
Q  243 agattctcccccttacctcgattccttc-gaaaattctagctttggcttgattccgtcgcagctagggtttctc 315  Q
    ||||||||||||||||||||||| |||| |||| ||| ||| |||||||||| |||||||| ||||||||||||    
T  16604 agattctcccccttacctcgatttcttctgaaatttccagc-ttggcttgatcccgtcgcaactagggtttctc 16676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 533
Target Start/End: Complemental strand, 24829811 - 24829661
Alignment:
Q  383 ctattctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccac 482  Q
    ||||||||| || |||  |||||||||||| | ||| |  ||||||||||  ||| |||  || |||| |||||||| |||||||| |||||||||||||    
T  24829811 ctattctaaatcttaacctttctatttatattagggccggtcacttgttaagattctcttatcctctactcactattcttttactcttcccctcccccac 24829712  T
Q  483 ttatttgaaacttatattctacacctccgacactattttattttgttttga 533  Q
    |||||| |||||||||||||||||| ||||| |||| ||||||| ||||||    
T  24829711 ttatttaaaacttatattctacacccccgactctatgttattttattttga 24829661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 23909047 - 23909135
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    |||||||||| ||||||| ||||||| |||||||||||  |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  23909047 accctatcatgcaaacacaaattctttgttaacctaccgaattatccacttttttaaagactaaaactcaattcaaaaacttaaactag 23909135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 13938830 - 13938917
Alignment:
Q  32 ctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaacctaaactag 117  Q
    |||| |||||||||||||||||| |||||||||||  |||||||| ||||||||||  |  ||||||||||||||| |||||||||||    
T  13938830 ctataattcaaacactaattctttgttaacctaccggattatccattctttttaaggataaaaaactcaattcaaatacctaaactag 13938917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 14137821 - 14137906
Alignment:
Q  33 tatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaattcaaaaacctaaactag 117  Q
    |||||| |||||| ||||||||| ||||||||||| |||||| |||||||||| | || |||||||| || |||||||||||||||    
T  14137821 tatcatccaaacagtaattcttcattaacctaccaaattatctactctttttacggctaaaaactcattttaaaaacctaaactag 14137906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 25756355 - 25756303
Alignment:
Q  206 accctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| |||||    
T  25756355 accctcctgtcatagattaagataccctaaagtgcaaagattctccctcttac 25756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 278
Target Start/End: Original strand, 14138005 - 14138083
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattc 278  Q
    ||||||||||||  |||| | | ||||||||||||||||  | ||||| ||||||||||||||| ||||||||||||||    
T  14138005 aagacaaccctcccatcaaataataagataccctaaagtaaagagattgtcccccttacctcgaatccttcgaaaattc 14138083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 25791883 - 25791941
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    |||| ||||||| | |||||||||||||||||||||||| ||||||||||||| |||||    
T  25791883 aagaaaaccctcctgtcatagattaagataccctaaagttcaaagattctccctcttac 25791941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 32948866 - 32948927
Alignment:
Q  199 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctc 261  Q
    |||||||||||||  |||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  32948866 aaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctcccccttacctc 32948927  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 507
Target Start/End: Original strand, 13939172 - 13939293
Alignment:
Q  386 ttctaactcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccactta 485  Q
    |||||||||||||   ||||||||||| |||||||  ||||||||||  ||| | | ||| || | |||||||| |||||| | |||| |||||||||||    
T  13939172 ttctaactcctaaccattctatttatatttgggtcggtcacttgttaatattctattctcctcgactcactattcttttacccctcccttcccccactta 13939271  T
Q  486 tttgaaacttatattctacacc 507  Q
    ||  ||||||||||| ||||||    
T  13939272 ttgaaaacttatattatacacc 13939293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 532
Target Start/End: Original strand, 14138192 - 14138315
Alignment:
Q  407 tttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttgaaacttatattctacac 506  Q
    |||||| || ||||||||||||||||  ||| ||| ||| |||| || ||||| ||||||||   |||||||| |||||||| |||||||||||||||||    
T  14138192 tttatatttaggtcaatcacttgttaagattatcttctcctctactcgctattcttttactccaaccctcccc-acttatttaaaacttatattctacac 14138290  T
Q  507 ctccgacactattttattttgttttg 532  Q
    | | ||| |||| ||||||| |||||    
T  14138291 c-ctgactctatattattttattttg 14138315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 25581374 - 25581329
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  25581374 atcatagat-aagataccctaaagtggaaagattctcccccttacct 25581329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 13939029 - 13939078
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    |||||| |||||||||| |||||||||||||||||| || ||||||||||    
T  13939029 atcatatattaagatacactaaagtgcaaagattcttcctcttacctcga 13939078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 25791694 - 25791782
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagact-aaaactcaatt-caaaaacctaaactag 117  Q
    ||||||||||||||||||||  |  ||||||||||   ||||| |||||||||||||||| |||||||||||  ||||| |||||||||    
T  25791694 cctatcattcaaacactaatcataggttaacctactggattattcactctttttaagactaaaaactcaattagaaaaaactaaactag 25791782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 509
Target Start/End: Complemental strand, 23949861 - 23949805
Alignment:
Q  453 cactattattttactcatcccctcccccacttatttgaaacttatattctacacctc 509  Q
    ||||||| |||||||||  | |||||| |||| ||| ||||||||||||||||||||    
T  23949861 cactattcttttactcaatcactcccctacttgtttaaaacttatattctacacctc 23949805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 24564977 - 24565025
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttacctcga 263  Q
    ||||| ||||||| ||||||||||||||||||| | ||| |||||||||    
T  24564977 tcatatattaagagaccctaaagtgcaaagatttttcccattacctcga 24565025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 25581565 - 25581498
Alignment:
Q  42 aacactaattcttcgttaacctaccatattatccactctttttaagact--aaaactcaattcaaaaa 107  Q
    ||||||||||||| ||||||||||   ||||||||||||||||| |  |  |||||||||||||||||    
T  25581565 aacactaattctttgttaacctactggattatccactctttttatggttaaaaaactcaattcaaaaa 25581498  T

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Target: scaffold0364 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 14617 - 14682
Alignment:
Q  199 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 264  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14617 aaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttacctcgat 14682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 11707 - 11801
Alignment:
Q  23 atcatcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    ||||| |||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  11707 atcattaccctatcattataacactaatttttcatcaacctactgtattatccactctttttaagactagaaactcaattc-aaaacctaaactag 11801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 797 - 737
Alignment:
Q  199 aaagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttacct 260  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||    
T  797 aaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttacct 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 68118 - 68208
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaacta 116  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  68118 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaacta 68208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 5121 - 5199
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattca 103  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||||    
T  5121 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 5199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 12141 - 12219
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattca 103  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||||||||||||    
T  12141 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattca 12219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 1263 - 1351
Alignment:
Q  29 accctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    |||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  1263 accctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 1759 - 1850
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaactag 117  Q
    |||| |||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  1759 atcaacctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaactcaattc-gaaacctaaactag 1850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 15055 - 15098
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  15055 tcatagattaagataccctatagtgcaaagattctcccccttac 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 14860 - 14946
Alignment:
Q  31 cctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagactaaaactcaattcaaaaacctaaactag 117  Q
    ||||||||| ||||||||||  || |||||||||||  ||| | ||||||||| |||||||||| |||||| ||||| | |||||||    
T  14860 cctatcattaaaacactaatcatttgttaacctaccgaattgttcactcttttcaagactaaaattcaattaaaaaaacaaaactag 14946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 574 - 516
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    ||||||||||||  ||||||||||||||||| ||| | |||||||||||||||||||||    
T  574 aagacaaccctctcatcatagattaagatactctacattgcaaagattctcccccttac 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 13458 - 13547
Alignment:
Q  26 atcaccctatcattcaaacactaattcttcgttaacctaccatattatccactctttttaagacta-aaactcaattcaaaaacctaaact 115  Q
    ||||||||||||||  |||||||||| ||| | |||||||  |||||||||||||||||||||||| ||| |||||||  |||||||||||    
T  13458 atcaccctatcattataacactaattattcatcaacctactgtattatccactctttttaagactagaaattcaattc-gaaacctaaact 13547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 11738 - 11659
Alignment:
Q  41 aaacactaattcttcgttaacctaccatattatccactctttttaagact---aaaactcaattcaaaaacctaaactag 117  Q
    |||||||||||||| |||||| ||||  ||||||||||| ||||||| ||   |||||||||||||||||| ||||||||    
T  11738 aaacactaattctttgttaacttaccggattatccactcattttaaggctaaaaaaactcaattcaaaaacataaactag 11659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 11553 - 11515
Alignment:
Q  215 tcatagattaagataccctaaagtgcaaagattctcccc 253  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  11553 tcatatattaagataccctaaagtgcaaagattctcccc 11515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 35520 - 35443
Alignment:
Q  214 atcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 292  Q
    |||||||||||| |||||||||||||  | || ||||||||||||||||| ||||| ||||| ||| | ||||||||||    
T  35520 atcatagattaa-ataccctaaagtggtaggaatctcccccttacctcgaatcctttgaaaaatctggttttggcttga 35443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 533
Target Start/End: Original strand, 54490 - 54631
Alignment:
Q  391 actcctaatgtttctatttataattgggtcaatcacttgttataattgtctgctcttctattcactattattttactcatcccctcccccacttatttga 490  Q
    ||||||||  |||||||||||| | ||||   ||||||||||  ||  ||| | |||||| |||||||| |||||||| |||||| ||| ||||| || |    
T  54490 actcctaacctttctatttatattagggttggtcacttgttaagatactcttcccttctactcactattcttttactcttcccctgcccaacttaattaa 54589  T
Q  491 aacttatattctacacctccgacactattttattttgttttga 533  Q
    ||  ||||||||||||| ||||| |||| ||||||| ||||||    
T  54590 aatatatattctacacc-ccgactctatgttattttattttga 54631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 143158 - 143216
Alignment:
Q  200 aagacaaccctcatatcatagattaagataccctaaagtgcaaagattctcccccttac 258  Q
    ||||||||| ||  |||||||||||||||||| ||||||| |||||||| |||||||||    
T  143158 aagacaaccttcccatcatagattaagataccataaagtgaaaagattcacccccttac 143216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0670 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 6503 - 6581
Alignment:
Q  213 tatcatagattaagataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaattctagctttggcttga 292  Q
    ||||||||||||| | |||||||||||  | || ||||||||||||||||| ||||| ||||| ||| | ||||||||||    
T  6503 tatcatagattaa-acaccctaaagtggtaggaatctcccccttacctcgaatcctttgaaaaatctggttttggcttga 6581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 15438 - 15389
Alignment:
Q  226 gataccctaaagtgcaaagattctcccccttacctcgattccttcgaaaa 275  Q
    |||||||||||||| || || ||||||||||||||||| ||||| |||||    
T  15438 gataccctaaagtgaaaggaatctcccccttacctcgaatcctttgaaaa 15389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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