View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0713_low_61 (Length: 251)
Name: NF0713_low_61
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_61 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr2 (9 HSPs) |
| |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
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| [»] scaffold0140 (1 HSPs) |
| | |
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| [»] chr6 (3 HSPs) |
| |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 27341632 - 27341402
Alignment:
| Q |
22 |
catcatcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccacc |
121 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27341632 |
catcatcacctccttcaatgtcataaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccacc |
27341533 |
T |
|
| Q |
122 |
aatgtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
27341532 |
aatgtatttcttttcaataaacacttttggcaatcctcttttaccatagtactcttcaccaagtaactctttaagctcttccttgaatcctaaatgcatt |
27341433 |
T |
|
| Q |
222 |
tctcaagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |
|
|
| T |
27341432 |
tctcaagcttctttgtttgtctttaatatct |
27341402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 27188374 - 27188147
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27188374 |
catcacctccttcaatgtcattaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaat |
27188275 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
27188274 |
gtatttcttttcaataaacacttttggtaatcttcctttaccatagtacccttcaccaagtaactctttaagctcttccttgaatcctaaatgcatttct |
27188175 |
T |
|
| Q |
225 |
caagcttctttgt-ttcctttaatatct |
251 |
Q |
| |
|
|||||||| |||| | |||||||||||| |
|
|
| T |
27188174 |
caagcttccttgtctgcctttaatatct |
27188147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 13545016 - 13544794
Alignment:
| Q |
30 |
cctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatgtatt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
13545016 |
cctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactctaccaatgtatt |
13544917 |
T |
|
| Q |
130 |
tcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctcaagc |
229 |
Q |
| |
|
| |||||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
13544916 |
ttttttcaataaacacttttggtaatcctcctttaccatagtacccttcaccaagtaactctttaagctcttccttgaatcctaaatacatttctcaagc |
13544817 |
T |
|
| Q |
230 |
ttctttgttt-cctttaatatct |
251 |
Q |
| |
|
||| |||||| |||||||||||| |
|
|
| T |
13544816 |
ttccttgtttgcctttaatatct |
13544794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 38424565 - 38424338
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
38424565 |
catcacctccttcaatgtcatcaatcctttcacaacaaaaaagcgatttctcaagcttcttgtcaacatgaagtttctgaatttccttaactccaccaat |
38424466 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| |||||||||||| | ||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
38424465 |
gtatttcttttcaaaaaacacttttgataatcctcctttaccatagtacccttcaccaagtaactctttaagctattccttgaatcctaaatgcatttct |
38424366 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
||||||||||||||| ||||| |||||| |
|
|
| T |
38424365 |
caagcttctttgtttgcctttgatatct |
38424338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 25455999 - 25456227
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
25455999 |
catcacctcctttaatgccatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaactttctgaatttcctcaactcaaccaat |
25456098 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctc-tcccttgaatcataaatgcatttc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||| ||| ||||||| |||||| |||| |
|
|
| T |
25456099 |
gtatttcttttcaataaacacttttggtaatcctcatttaccatagtacccttcaccaagtaactctttaagctcttcctttgaatcttaaatgtatttt |
25456198 |
T |
|
| Q |
224 |
tcaagc-ttctttgtttcctttaatatct |
251 |
Q |
| |
|
||||| |||||| ||| ||||||||||| |
|
|
| T |
25456199 |
acaagctttctttctttactttaatatct |
25456227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 21362171 - 21361980
Alignment:
| Q |
26 |
atcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatg |
125 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
21362171 |
atcacctccttcaatgtcgtcaatcctttcacaacaatcaagtaattactcaagcttcttgtcatcatgaagtttctgaatttcctcaactccagcaatg |
21362072 |
T |
|
| Q |
126 |
tatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatg |
217 |
Q |
| |
|
| ||||||| |||||||||||||||||||| ||| |||||||||||| | | |||||||||||||||| | |||| | ||||||| |||||| |
|
|
| T |
21362071 |
tttttctttccaataaacacttttggtaatcctcctttaccatagtaccctccaccaagtaactcttttaactcttcattgaatcctaaatg |
21361980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 14252325 - 14252098
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
14252325 |
catcacctccttcaatgtcatcaatcctttcacaacgatcaagcaatttctcaagcttcttgtcatcatgaagtttttgaatttcctcaactccaccaat |
14252226 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||| | ||||||||||||||||||||||| | | ||||||| ||||||||||||| |
|
|
| T |
14252225 |
gtatttcttttcaataaacactttttgtaatcctcatttaccatagtacccttcaccaagtaactctttaagctattctttgaatcttaaatgcatttct |
14252126 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
14252125 |
caagcttccttgtttgcctttaatatct |
14252098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 9758742 - 9758522
Alignment:
| Q |
32 |
tccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatgtatttc |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9758742 |
tccttcaatgtcatcaatcctttcacaaaaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaacgtatttc |
9758643 |
T |
|
| Q |
132 |
ttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctcaagctt |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
9758642 |
ttttcaataaacacttttggtaatcctcctttaccatagtactcttcgtcaagtaactctttaaactcttccttgaatcctaaatgcatttctcaagctt |
9758543 |
T |
|
| Q |
232 |
ctttg-tttcctttaatatct |
251 |
Q |
| |
|
| ||| || |||||||||||| |
|
|
| T |
9758542 |
ccttgcttgcctttaatatct |
9758522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 10317338 - 10317545
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10317338 |
catcacctccttcaatgccatcaatcctttcacaacaatcaagcaatttctcaagctttttgtcatcatgaagtttctgaattttctcaactccaccaat |
10317437 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||| |||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||| | |
|
|
| T |
10317438 |
gtacttcttttcaataaacacttttattaatcctcctttaccatagtacccttcaccaagtaactctttaagctcttccttgaattttaaatgcattttt |
10317537 |
T |
|
| Q |
225 |
caagcttc |
232 |
Q |
| |
|
||| |||| |
|
|
| T |
10317538 |
caaacttc |
10317545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 5607257 - 5607050
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5607257 |
catcaccgtcttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgttatcatgaagtttctgaatttcctcaactccaccaac |
5607158 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||| | |
|
|
| T |
5607157 |
ttatttattttcaataaacacttttggtaatcctcctttaccatagtatccttcaccaagtaactctttaagttctttcttgaatcctaaatgcatttat |
5607058 |
T |
|
| Q |
225 |
caagcttc |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
5607057 |
caagcttc |
5607050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10315565 - 10315649
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
109 |
Q |
| |
|
||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315565 |
catcacctctttcaatgccatcaatcatttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
10315649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10316293 - 10316377
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
109 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316293 |
catcacctccttcaatgccatcaatccattcacaataatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
10316377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 10316976 - 10317059
Alignment:
| Q |
26 |
atcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
109 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316976 |
atcacctccttcaatgccatcaatccattcacaataatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
10317059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10315929 - 10316013
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
109 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10315929 |
catcacatccttcaatgccatcaatccattcacaataatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
10316013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10316618 - 10316702
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
109 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10316618 |
catcacctccttcaatgccatcaatccattcacagtaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttt |
10316702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 21386876 - 21387102
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
21386876 |
catcacctccttcaatgccattaatcatttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaccaat |
21386975 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| || | |
|
|
| T |
21386976 |
gtatttcttttcaataaacacttttggtaatcctcctttaccatagtttccttcaccaagtaactctttaagctcttccttgaatcataaatgca-ttat |
21387074 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||| |||||| |||||||||||| |
|
|
| T |
21387075 |
caagcttccttgtttgcctttaatatct |
21387102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 30022853 - 30022626
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30022853 |
catcacctccttcaatgtcattaatcctttcacaacaatcaagtaatttctcaagtttcttgtcatcatgaagtttctgaatttcctcaactccaccaat |
30022754 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
30022753 |
gtatttcatttcaataagcacttttggtaatcctcctttaccatagtaccattcaccaagtaactctttaaactcttccttgaatcctaaatgcatttct |
30022654 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||| |||||| | |||||||||| |
|
|
| T |
30022653 |
caagcttccttgtttgcatttaatatct |
30022626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 25 - 249
Target Start/End: Complemental strand, 29644602 - 29644377
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |
|
|
| T |
29644602 |
catcatctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaacttcatcaat |
29644503 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| | |||||||||||||||||||| || | ||||||||| ||| | ||||||| |
|
|
| T |
29644502 |
gtatttcttttcaataaacaattttggtaatcctcctttaccatagtacccttcaccaagtaactctttaaactattccttgaatcctaattacatttct |
29644403 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatat |
249 |
Q |
| |
|
|||||||| |||||| |||||||||| |
|
|
| T |
29644402 |
caagcttccttgtttgcctttaatat |
29644377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 33696990 - 33697205
Alignment:
| Q |
27 |
tcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatgt |
126 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33696990 |
tcacctacttcaatgtcatcactcctttcacaacaatcaaacaatttctcaagcttcttgtcatcatgaagtttc---------tcaactccaccaatgt |
33697080 |
T |
|
| Q |
127 |
atttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctca |
226 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||| ||||||| |||| ||||||||| ||||| ||||| ||| |
|
|
| T |
33697081 |
atttcttttcaataaacactttttgtaattctcctttactatagtatccttcaccaagtaattctttaaactcttccttgaatcctaaatacatttatca |
33697180 |
T |
|
| Q |
227 |
agcttctttgttt-cctttaatatc |
250 |
Q |
| |
|
|||||| || ||| ||||||||||| |
|
|
| T |
33697181 |
agcttcgttctttgcctttaatatc |
33697205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 42491215 - 42491314
Alignment:
| Q |
152 |
taattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctcaagcttctttgttt-cctttaatatc |
250 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||| ||||| |||||| ||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
42491215 |
taatcctcctttaccatagtatccttcaccaactaact-tttaagttcttccttgaatcctaaatgcatttctcaaacttctttgtttgcctttaatatc |
42491313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 2372956 - 2372913
Alignment:
| Q |
90 |
tcatgaagtttctgaattttctcaactccaccaatgtatttctt |
133 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
2372956 |
tcatgaagtttctcaatttcctcaactccaccaatgtaattctt |
2372913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 22388799 - 22388573
Alignment:
| Q |
26 |
atcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22388799 |
atcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatg |
22388700 |
T |
|
| Q |
126 |
tatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctc |
225 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | |||||||||| | |||||||||||||||||||| |||| ||||||||| ||||||||||| | |
|
|
| T |
22388699 |
tatttcttttcactaaacacttttggtaatcctcctctaccatagtacccttcaccaagtaactctttaaactcttccttgaatcctaaatgcatttata |
22388600 |
T |
|
| Q |
226 |
aagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
||||||| |||||| ||||||||||| |
|
|
| T |
22388599 |
aagcttccttgtttgtctttaatatct |
22388573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 27 - 251
Target Start/End: Complemental strand, 43214932 - 43214707
Alignment:
| Q |
27 |
tcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatgt |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43214932 |
tcacctccttcaatgtcctcaatcctttcacaacaatcaaacaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgt |
43214833 |
T |
|
| Q |
127 |
atttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctca |
226 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||| | ||||||||| |||||| |||||||| |
|
|
| T |
43214832 |
atttctttttaataaacacttttggtaatcctccattacaatagtatccttcaccaagtaactctttaagcttttccttgaatcctaaatgtatttctca |
43214733 |
T |
|
| Q |
227 |
agcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
| |||| |||||| |||||||||||| |
|
|
| T |
43214732 |
aacttccttgtttgcctttaatatct |
43214707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 44209550 - 44209347
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44209550 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgccatcatgaagtttctgaatttcctcaactccaccaac |
44209451 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||||| ||||| ||||||| |
|
|
| T |
44209450 |
gtatttcttttcaataaacacttttggtaatcctcctttaccatagtactcttcaccaagtaactctttaagctattccttgaatcctaaatacatttct |
44209351 |
T |
|
| Q |
225 |
caag |
228 |
Q |
| |
|
|||| |
|
|
| T |
44209350 |
caag |
44209347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 32814684 - 32814458
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32814684 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaaacaatttctcaagtttcttgtcatcatgaaatttctgaatttcctcaactccaccaat |
32814585 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||| ||||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
32814584 |
gtatttcttttcaataaacacttttggtaatcctcctttaccgtagtattcttcaccaggtaactctttaagctcttccttgaatcctaaatacatttct |
32814485 |
T |
|
| Q |
225 |
caagcttctttgttt-cctttaatatc |
250 |
Q |
| |
|
|||||| |||||| ||||||||||| |
|
|
| T |
32814484 |
taagctttcttgtttgcctttaatatc |
32814458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 44209727 - 44209675
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctca |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44209727 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctca |
44209675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 44 - 247
Target Start/End: Original strand, 4885 - 5089
Alignment:
| Q |
44 |
atcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaatgtatttcttttcaataaac |
143 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4885 |
atcaatcctttcacagcaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaatgtatttcttttcaataaac |
4984 |
T |
|
| Q |
144 |
acttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttctcaagcttctttgttt-cct |
242 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||| |||||| ||| |
|
|
| T |
4985 |
acttttggtaatcctcctttaccatagtatgcttcaccaagtaactcttcaagttcttccttgaatcttaaatgcatttctcaagcttccttgtttgcct |
5084 |
T |
|
| Q |
243 |
ttaat |
247 |
Q |
| |
|
||||| |
|
|
| T |
5085 |
ttaat |
5089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 32154951 - 32155178
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32154951 |
catcacatctttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaatttcctcaactccaccaac |
32155050 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
32155051 |
gtatttcttttcaagaaacacttttggtaatcatcctttaccatagtactcttcaccaagtaactctttaagctcttccttaaatcctaaatgcatttct |
32155150 |
T |
|
| Q |
225 |
caagc-ttctttgtttcctttaatatct |
251 |
Q |
| |
|
||||| ||||| || |||||||||||| |
|
|
| T |
32155151 |
caagctttcttgcttgcctttaatatct |
32155178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 14608503 - 14608297
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||| ||||||||||||| ||||||||||||| |||| ||||||||| || |||||||| ||| |
|
|
| T |
14608503 |
catcacctccttcaatgttgttaatcctttcacaataatcgagcaatttctcaaacttcttgtcatcacaaagtctctgaatttcct-aactccacaaat |
14608405 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttct |
224 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
14608404 |
gtatttcttttcaaaaaacacttttggtaatcctcctttaccatagtatccttcaccaagtaactctttaagctcttccttgaattctaaatgcatttct |
14608305 |
T |
|
| Q |
225 |
caagcttc |
232 |
Q |
| |
|
|||||||| |
|
|
| T |
14608304 |
caagcttc |
14608297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 3377564 - 3377368
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| || |||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
3377564 |
catcacctccttcaatgtcgtcaactctttcacaacaatcaaataatttctcaagctttttatcatcatgtaatttctgaatttcctcaactccaccaat |
3377465 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatt |
221 |
Q |
| |
|
||||||| || |||||||||||||||||||| | | ||||||||||| | |||||||||||||||||| |||||| |||| |||| |||||||||| |
|
|
| T |
3377464 |
gtatttccttccaataaacacttttggtaatccacctttaccatagttcccttcaccaagtaactctttgagctcttccttaaatcctaaatgcatt |
3377368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 21858075 - 21857847
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt-tctcaactccaccaa |
123 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
21858075 |
catcacctcctttaatgtcattaatcctttcacaactatcaagcaattcctcaagcttcttgtcatcatgaagtttctgaatttcttttaactccaccaa |
21857976 |
T |
|
| Q |
124 |
tgtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| | | | ||||||||||||||||| ||||||| | ||||||| |||||||||||| |
|
|
| T |
21857975 |
tgtatttcttttcaataaacacttttggtaatcctcttttaccatggaacccttcaccaagtaactcttaaagctcttctttgaatcctaaatgcatttc |
21857876 |
T |
|
| Q |
224 |
tcaagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
21857875 |
tcaagcttctttgtttgcctttaatatct |
21857847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 21913938 - 21913710
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattt-tctcaactccaccaa |
123 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
21913938 |
catcacctcctttaatgtcattaatcctttcacaactatcaagcaattcctcaagcttcttgtcatcatgaagtttctgaatttcttttaactccaccaa |
21913839 |
T |
|
| Q |
124 |
tgtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatttc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| | | | ||||||||||||||||| ||||||| | ||||||| |||||||||||| |
|
|
| T |
21913838 |
tgtatttcttttcaataaacacttttggtaatcctcttttaccatggaacccttcaccaagtaactcttaaagctcttctttgaatcctaaatgcatttc |
21913739 |
T |
|
| Q |
224 |
tcaagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
21913738 |
tcaagcttctttgtttgcctttaatatct |
21913710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 45765004 - 45765200
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
|
|
| T |
45765004 |
catcacctccttcaatgtcatcaatcatttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctaaatttcctcaactccaacaat |
45765103 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatt |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||| ||| |||| |||| |||||||||| |
|
|
| T |
45765104 |
gtatttctttccaataaacacttttggtaatcctcatttaccatagtaccattcaccaaataactctttaagttcttccttaaatcctaaatgcatt |
45765200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 35194510 - 35194740
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35194510 |
catcacctccttcaatatcatcaatcctttcacaacaataaagcaatttctcaaacttcttgtcatcatgaagtttctgaatttcctcaactccaccaat |
35194609 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaatt----ctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcat |
220 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| |||||||||||| | ||||| |||||||| |||||||| | ||||||||| |||||| | |
|
|
| T |
35194610 |
gtatttcttttcaa-aaacacttttgataatcaatcctcctttaccatagtacccttcacgaagtaactatttaagctattccttgaatcctaaatgtgt |
35194708 |
T |
|
| Q |
221 |
ttctcaagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| |
|
|
| T |
35194709 |
ttctcaagcttccttgtttgcctttaatatct |
35194740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 12595032 - 12595258
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccac---c |
121 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
12595032 |
catcacctccttcaatttcattaatcctttcacaacaa-caagcaatttctcaagcttcttgccatcatgaagtttctgaatttcctcaactccaccacc |
12595130 |
T |
|
| Q |
122 |
aatgtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatt |
221 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| |||||||||||| | |||||||||||||| |||||||| | |||||||| ||||||| |
|
|
| T |
12595131 |
aatgtatttcttttcaataaacacatttggtaatcctcatttaccatagtacccttcaccaagtaactatttaagcttttacttgaatcctaaatgc--- |
12595227 |
T |
|
| Q |
222 |
tctcaagcttctttgttt-cctttaatatct |
251 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
12595228 |
gctcaagcttctttgtttacctttaatatct |
12595258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 25 - 221
Target Start/End: Original strand, 9665981 - 9666177
Alignment:
| Q |
25 |
catcacctccttcaatgtcatcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcatcatgaagtttctgaattttctcaactccaccaat |
124 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| || |||| |
|
|
| T |
9665981 |
catcacctccttcaatgtcgtcaatcctttcacaacaatcaagcaatttctcaagcttcttgtcattatgaagtttatgaatttcctcaactacaacaat |
9666080 |
T |
|
| Q |
125 |
gtatttcttttcaataaacacttttggtaattctcgtttaccatagtatcattcaccaagtaactctttaagctctcccttgaatcataaatgcatt |
221 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||| |||| ||||||| | ||||||||||||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
9666081 |
gtatttctttccaataaatacttttggtaatcctcctttatcatagtacctttcaccaagtaactctttaagctcttccttgaatcttatatgcatt |
9666177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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