View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_67 (Length: 244)

Name: NF0713_low_67
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_67
NF0713_low_67
[»] scaffold0298 (1 HSPs)
scaffold0298 (1-152)||(274-425)
[»] chr8 (27 HSPs)
chr8 (1-152)||(38184924-38185075)
chr8 (43-152)||(20494554-20494663)
chr8 (1-86)||(18023568-18023653)
chr8 (58-145)||(22366099-22366186)
chr8 (58-152)||(21514393-21514487)
chr8 (58-152)||(22723274-22723368)
chr8 (58-144)||(4380865-4380951)
chr8 (58-131)||(18816551-18816624)
chr8 (1-65)||(18816307-18816371)
chr8 (1-64)||(22208246-22208309)
chr8 (85-152)||(24907917-24907986)
chr8 (1-64)||(22483763-22483826)
chr8 (3-65)||(36732426-36732488)
chr8 (1-65)||(21514667-21514731)
chr8 (25-65)||(4380653-4380693)
chr8 (3-67)||(22258320-22258384)
chr8 (1-65)||(22483914-22483978)
chr8 (115-152)||(18023647-18023684)
chr8 (1-54)||(21399704-21399757)
chr8 (1-54)||(21794197-21794250)
chr8 (1-54)||(22345151-22345204)
chr8 (1-54)||(22356811-22356864)
chr8 (1-67)||(21676512-21676576)
chr8 (1-67)||(21676605-21676669)
chr8 (1-67)||(21678858-21678922)
chr8 (1-54)||(23884158-23884209)
chr8 (58-107)||(24239756-24239805)
[»] chr3 (25 HSPs)
chr3 (1-152)||(2247878-2248029)
chr3 (63-152)||(25104036-25104125)
chr3 (58-152)||(24546902-24546996)
chr3 (58-152)||(24549207-24549301)
chr3 (58-144)||(17208234-17208320)
chr3 (58-144)||(14520156-14520242)
chr3 (1-65)||(45803343-45803407)
chr3 (1-54)||(22841291-22841344)
chr3 (1-65)||(14641560-14641624)
chr3 (1-65)||(17208500-17208564)
chr3 (1-65)||(29907615-29907679)
chr3 (1-65)||(29948781-29948845)
chr3 (1-65)||(29997935-29997999)
chr3 (1-64)||(14152411-14152474)
chr3 (1-65)||(14520422-14520486)
chr3 (4-61)||(5215627-5215684)
chr3 (1-65)||(12917318-12917382)
chr3 (25-64)||(15566721-15566760)
chr3 (1-54)||(17669710-17669763)
chr3 (58-107)||(17758665-17758714)
chr3 (58-107)||(19059985-19060034)
chr3 (1-54)||(54875486-54875539)
chr3 (1-54)||(3527169-3527222)
chr3 (1-54)||(6156698-6156750)
chr3 (58-107)||(40038987-40039036)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-152)||(10485-10635)
[»] chr7 (39 HSPs)
chr7 (1-152)||(34958234-34958385)
chr7 (1-152)||(831862-832012)
chr7 (1-152)||(1197042-1197192)
chr7 (58-152)||(4690917-4691011)
chr7 (58-152)||(47095154-47095248)
chr7 (58-152)||(18079554-18079648)
chr7 (58-152)||(43745358-43745452)
chr7 (61-153)||(20252446-20252538)
chr7 (58-144)||(15575905-15575991)
chr7 (63-144)||(18874922-18875003)
chr7 (2-64)||(20252195-20252257)
chr7 (1-62)||(708441-708502)
chr7 (1-65)||(15575661-15575725)
chr7 (1-65)||(43745632-43745696)
chr7 (1-65)||(47095428-47095492)
chr7 (1-64)||(8513765-8513828)
chr7 (1-51)||(38299738-38299788)
chr7 (1-65)||(19195588-19195651)
chr7 (1-64)||(8488106-8488169)
chr7 (3-62)||(18874679-18874740)
chr7 (75-152)||(3192149-3192227)
chr7 (58-152)||(48212984-48213063)
chr7 (25-64)||(4690699-4690738)
chr7 (1-64)||(43276756-43276818)
chr7 (1-54)||(58425-58478)
chr7 (1-54)||(16250234-16250287)
chr7 (58-99)||(19070012-19070053)
chr7 (3-65)||(19283030-19283094)
chr7 (1-54)||(33556117-33556170)
chr7 (3-54)||(13315096-13315147)
chr7 (58-152)||(16368427-16368522)
chr7 (3-54)||(36300655-36300706)
chr7 (3-57)||(15700897-15700951)
chr7 (1-55)||(25943253-25943307)
chr7 (29-67)||(42565872-42565910)
chr7 (1-54)||(13744522-13744575)
chr7 (4-65)||(15700750-15700810)
chr7 (1-54)||(15720766-15720819)
chr7 (58-107)||(16383825-16383874)
[»] chr4 (23 HSPs)
chr4 (1-145)||(17142918-17143062)
chr4 (3-152)||(15747787-15747935)
chr4 (58-152)||(2424643-2424737)
chr4 (58-148)||(10237326-10237416)
chr4 (58-152)||(14630839-14630933)
chr4 (58-152)||(26445909-26446003)
chr4 (1-65)||(25513827-25513891)
chr4 (3-65)||(14631111-14631173)
chr4 (1-67)||(9638984-9639050)
chr4 (3-64)||(33186880-33186941)
chr4 (1-65)||(16296914-16296978)
chr4 (1-65)||(35660932-35660996)
chr4 (101-152)||(16025917-16025968)
chr4 (2-65)||(26446183-26446246)
chr4 (1-64)||(12424302-12424367)
chr4 (58-107)||(15213681-15213730)
chr4 (58-107)||(54363351-54363400)
chr4 (3-49)||(13847193-13847239)
chr4 (1-54)||(9622476-9622529)
chr4 (1-54)||(10273370-10273423)
chr4 (3-52)||(15239830-15239879)
chr4 (58-107)||(19622239-19622288)
chr4 (1-54)||(55583183-55583236)
[»] scaffold0056 (2 HSPs)
scaffold0056 (58-152)||(15880-15974)
scaffold0056 (3-65)||(18251-18313)
[»] chr5 (10 HSPs)
chr5 (58-152)||(1627324-1627418)
chr5 (58-152)||(18744583-18744677)
chr5 (58-145)||(660499-660586)
chr5 (58-144)||(23199463-23199549)
chr5 (1-64)||(18744851-18744914)
chr5 (1-64)||(23199219-23199282)
chr5 (1-65)||(16063727-16063791)
chr5 (1-65)||(660766-660829)
chr5 (25-65)||(6551326-6551366)
chr5 (1-54)||(32607328-32607381)
[»] chr1 (20 HSPs)
chr1 (65-152)||(20822732-20822819)
chr1 (58-152)||(28476990-28477084)
chr1 (58-152)||(20836536-20836630)
chr1 (58-144)||(24719766-24719852)
chr1 (2-64)||(24719523-24719585)
chr1 (3-65)||(50544848-50544910)
chr1 (1-65)||(38056684-38056748)
chr1 (58-111)||(12710627-12710680)
chr1 (1-65)||(12710843-12710907)
chr1 (1-65)||(22145678-22145742)
chr1 (1-65)||(28476746-28476810)
chr1 (3-54)||(17901808-17901859)
chr1 (4-65)||(6834152-6834213)
chr1 (3-67)||(8276003-8276067)
chr1 (1-54)||(8306593-8306646)
chr1 (2-54)||(35895086-35895138)
chr1 (3-54)||(34392755-34392806)
chr1 (3-49)||(635018-635064)
chr1 (29-67)||(39061295-39061333)
chr1 (58-104)||(41931308-41931354)
[»] scaffold1186 (2 HSPs)
scaffold1186 (58-152)||(1724-1818)
scaffold1186 (3-65)||(1996-2058)
[»] scaffold0005 (2 HSPs)
scaffold0005 (58-152)||(186450-186544)
scaffold0005 (3-65)||(186210-186272)
[»] scaffold0516 (2 HSPs)
scaffold0516 (58-147)||(7578-7667)
scaffold0516 (25-65)||(5341-5381)
[»] scaffold0878 (2 HSPs)
scaffold0878 (58-152)||(3678-3772)
scaffold0878 (1-65)||(3434-3498)
[»] chr2 (11 HSPs)
chr2 (58-144)||(21315734-21315820)
chr2 (58-152)||(29114465-29114559)
chr2 (58-144)||(21369002-21369088)
chr2 (58-144)||(21335524-21335610)
chr2 (1-64)||(21315488-21315551)
chr2 (1-64)||(21335278-21335341)
chr2 (60-118)||(23610356-23610414)
chr2 (1-61)||(21369273-21369333)
chr2 (1-65)||(23610602-23610666)
chr2 (1-54)||(23801483-23801536)
chr2 (25-65)||(34491276-34491316)
[»] scaffold0369 (2 HSPs)
scaffold0369 (59-152)||(15872-15965)
scaffold0369 (11-65)||(15637-15691)
[»] scaffold0162 (1 HSPs)
scaffold0162 (58-144)||(24138-24224)
[»] chr6 (12 HSPs)
chr6 (58-144)||(20410766-20410852)
chr6 (1-65)||(21683087-21683151)
chr6 (58-152)||(17856515-17856610)
chr6 (1-64)||(23658066-23658129)
chr6 (3-65)||(19825500-19825562)
chr6 (6-64)||(20410529-20410587)
chr6 (21-65)||(18982548-18982592)
chr6 (3-54)||(29045258-29045309)
chr6 (1-54)||(10446204-10446257)
chr6 (98-151)||(16386528-16386580)
chr6 (25-65)||(15998865-15998905)
chr6 (29-67)||(24506155-24506193)
[»] scaffold0203 (2 HSPs)
scaffold0203 (58-144)||(18196-18284)
scaffold0203 (25-65)||(17976-18016)
[»] scaffold0032 (1 HSPs)
scaffold0032 (58-144)||(62107-62195)
[»] scaffold0468 (1 HSPs)
scaffold0468 (58-152)||(11023-11118)
[»] scaffold0676 (1 HSPs)
scaffold0676 (1-65)||(2857-2921)
[»] scaffold0061 (2 HSPs)
scaffold0061 (3-65)||(14600-14662)
scaffold0061 (3-65)||(23658-23720)
[»] scaffold0414 (2 HSPs)
scaffold0414 (58-144)||(11416-11504)
scaffold0414 (1-50)||(11172-11221)
[»] scaffold0594 (1 HSPs)
scaffold0594 (1-65)||(2223-2287)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-65)||(13925-13989)
[»] scaffold0174 (3 HSPs)
scaffold0174 (1-65)||(11592-11656)
scaffold0174 (1-50)||(5445-5494)
scaffold0174 (2-54)||(19843-19895)
[»] scaffold0231 (2 HSPs)
scaffold0231 (2-65)||(17534-17597)
scaffold0231 (58-103)||(17777-17822)
[»] scaffold0431 (1 HSPs)
scaffold0431 (1-64)||(5608-5673)
[»] scaffold0247 (1 HSPs)
scaffold0247 (3-65)||(1052-1114)
[»] scaffold0007 (2 HSPs)
scaffold0007 (21-65)||(16451-16495)
scaffold0007 (9-65)||(18721-18777)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-65)||(66084-66148)
scaffold0004 (5-57)||(111344-111396)
scaffold0004 (1-54)||(75924-75977)
[»] scaffold0183 (1 HSPs)
scaffold0183 (58-107)||(11120-11169)
[»] scaffold0086 (3 HSPs)
scaffold0086 (4-65)||(35201-35262)
scaffold0086 (11-65)||(35358-35411)
scaffold0086 (11-65)||(35507-35560)
[»] scaffold0017 (1 HSPs)
scaffold0017 (24-65)||(26703-26744)
[»] scaffold1256 (1 HSPs)
scaffold1256 (25-65)||(2236-2276)
[»] scaffold0213 (1 HSPs)
scaffold0213 (25-64)||(19184-19223)
[»] scaffold0853 (1 HSPs)
scaffold0853 (1-43)||(2466-2508)
[»] scaffold0058 (1 HSPs)
scaffold0058 (29-67)||(59695-59733)
[»] scaffold1204 (1 HSPs)
scaffold1204 (58-107)||(148-197)
[»] scaffold0730 (1 HSPs)
scaffold0730 (1-54)||(6517-6570)
[»] scaffold0505 (1 HSPs)
scaffold0505 (1-65)||(4912-4976)
[»] scaffold0452 (1 HSPs)
scaffold0452 (58-107)||(2843-2892)
[»] scaffold0328 (1 HSPs)
scaffold0328 (1-65)||(18652-18717)
[»] scaffold0108 (1 HSPs)
scaffold0108 (3-64)||(6395-6456)
[»] scaffold0139 (1 HSPs)
scaffold0139 (2-65)||(23510-23573)
[»] scaffold0379 (1 HSPs)
scaffold0379 (4-54)||(10935-10984)
[»] scaffold0021 (2 HSPs)
scaffold0021 (29-67)||(17080-17118)
scaffold0021 (29-67)||(26611-26649)
[»] scaffold0819 (1 HSPs)
scaffold0819 (24-65)||(5228-5269)
[»] scaffold0371 (1 HSPs)
scaffold0371 (31-64)||(10487-10520)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-54)||(127355-127408)


Alignment Details
Target: scaffold0298 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 425 - 274
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  425 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 326  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  325 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 38184924 - 38185075
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38184924 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttattgatgatgaatttacatgctcaagttatgtatatatg 38185023  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  38185024 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 38185075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 20494554 - 20494663
Alignment:
Q  43 agggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttg 142  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||    
T  20494554 agggtttaacattgtagttgttgatgataaatttacatgctcaagttatgtatatatgtaaacttgtgtttttgctcaaaattggtgaagtataatattg 20494653  T
Q  143 ttgttgatga 152  Q
    ||||||||||    
T  20494654 ttgttgatga 20494663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18023568 - 18023653
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18023568 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaa 18023653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 22366186 - 22366099
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  22366186 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttg 22366099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 21514487 - 21514393
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||    
T  21514487 agttgttgatgatgaaattatatgctcaagttatgtatatatgtatacttgtgttttttctcaaaattggtgaagtataatgttgttgttgatga 21514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 22723368 - 22723274
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||    
T  22723368 agttgttgatgatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtattttgttattgttgatga 22723274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 4380865 - 4380951
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||    
T  4380865 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtattatgttgtt 4380951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 18816551 - 18816624
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaa 131  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  18816551 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgttgaa 18816624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18816307 - 18816371
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  18816307 gggactagctttctctaaaaatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18816371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22208309 - 22208246
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  22208309 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 22208246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 24907986 - 24907917
Alignment:
Q  85 aagttatgtatatatgt--atacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  24907986 aagttatgtatatatgtgtatacttgtgttttttctcaaaattgatgaagtataatgttgttgttgatga 24907917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22483826 - 22483763
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| || ||||||    
T  22483826 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgtt 22483763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 36732426 - 36732488
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||    
T  36732426 gactagctttctctaataatgggttgtataattctgaaaaagagtttaaccttgtagttgttg 36732488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21514731 - 21514667
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||| |||||||||  ||| ||||||||||||| |||||||||||||| ||||||||||||    
T  21514731 gggactagatttctctaataatgagttgtataattcttaaaaagggtttaaccttgtagttgttg 21514667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 4380653 - 4380693
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  4380653 gttgtataattctgaaaaagggtttaaccttgtagttgttg 4380693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 22258320 - 22258384
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||||||||  ||| ||||||||||||  |||||||||||||| ||| ||||||||||    
T  22258320 gactagctttctctaataatgagttgtataattccaaaaaagggtttaaccttgcagttgttgat 22258384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22483978 - 22483914
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||| ||||||||||  ||| ||||||||||||| |||||||||||||||| || |||||||    
T  22483978 gggactaactttctctaataatgagttgtataattcttaaaaagggtttaacatggttgttgttg 22483914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 18023647 - 18023684
Alignment:
Q  115 tgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||| |||||||||||||||||||||||||    
T  18023647 tgctcaaaattggtgaagtataatgttgttgttgatga 18023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21399757 - 21399704
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  21399757 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 21399704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21794250 - 21794197
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  21794250 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 21794197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22345204 - 22345151
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| |||| ||||| |||||||||||    
T  22345204 gggactagctttctctaataatgggttgtatgattccgaaaaggggtttaacat 22345151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22356864 - 22356811
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| |||| ||||| |||||||||||    
T  22356864 gggactagctttctctaataatgggttgtatgattccgaaaaggggtttaacat 22356811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21676512 - 21676576
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||| ||||||  ||||||| ||||||| ||||| |||||||||| ||||||||||||||    
T  21676512 gggactagctt-ctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgat 21676576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21676605 - 21676669
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||| ||||||  ||||||| ||||||| ||||| |||||||||| ||||||||||||||    
T  21676605 gggactagctt-ctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgat 21676669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21678858 - 21678922
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||| ||||||  ||||||| ||||||| ||||| |||||||||| ||||||||||||||    
T  21678858 gggactagctt-ctctaataatgggtt-tataattatgaaatagggtttaactttgtagttgttgat 21678922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23884209 - 23884158
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    |||||||||||||||||||  |||||||||| ||||| |||| |||||||||||    
T  23884209 gggactagctttctctaaa--tgggttgtatgattctaaaaaggggtttaacat 23884158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 24239805 - 24239756
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||| ||||||||||| ||||||||||||  ||||| |||||||||||||    
T  24239805 agttcttgatgatgaaattacatgctcaatatatgtttatatgtatactt 24239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 2247878 - 2248029
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2247878 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 2247977  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
     |||||| ||| |||||||||||||| |||||||||||||||||||||||||    
T  2247978 catacttatgtttttgctcaaaattggtgaagtataatgttgttgttgatga 2248029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 25104036 - 25104125
Alignment:
Q  63 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  25104036 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattgatgaactataatgttgttgttgatga 25104125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 24546996 - 24546902
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||||    
T  24546996 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattgttgcccaaaattggtgaagtataatgttgttgttgatga 24546902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 24549207 - 24549301
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||||| |||||||||||||||||||||||||    
T  24549207 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtattcttgcccaaaattggtgaagtataatgttgttgttgatga 24549301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 17208320 - 17208234
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  17208320 agttgttgatgatgattttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 17208234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 14520242 - 14520156
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||    
T  14520242 agttgttgatgatgaatttatatgcttaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatatgatgttgtt 14520156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45803343 - 45803407
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||||||    
T  45803343 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaacatcgttgttgttg 45803407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22841291 - 22841344
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22841291 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaacat 22841344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14641560 - 14641624
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||| |||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||    
T  14641560 gggattagctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttg 14641624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17208564 - 17208500
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||| |||||| ||||||||||||    
T  17208564 gggactagctttctctaataatgagttgtataattctgaaaaaggatttaaccttgtagttgttg 17208500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29907679 - 29907615
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||| |||   ||||||||||||||||||||||||||||||| ||||||||||||    
T  29907679 gggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29907615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29948845 - 29948781
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||| |||   ||||||||||||||||||||||||||||||| ||||||||||||    
T  29948845 gggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29948781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29997999 - 29997935
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||| |||   ||||||||||||||||||||||||||||||| ||||||||||||    
T  29997999 gggactagctttctttaatattgggttgtataattctgaaaaagggtttaaccttgtagttgttg 29997935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14152411 - 14152474
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  ||| ||||||| |||||||||||||||||||| |||||||||||    
T  14152411 gggactagctttctctaataatgagttgtatcattctgaaaaagggtttaaccttgtagttgtt 14152474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14520486 - 14520422
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||| |||  ||||||||||||||||| ||||| |||||||| ||||||||||||    
T  14520486 gggactagctttctttaataatgggttgtataattctaaaaaaaggtttaaccttgtagttgttg 14520422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 5215684 - 5215627
Alignment:
Q  4 actagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagtt 61  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||| ||||||||    
T  5215684 actagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagtt 5215627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12917318 - 12917382
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||| ||||||||||  ||||||||||| ||||| |||||||||||||||| || |||||||    
T  12917318 gggactaactttctctaataatgggttgtatgattctaaaaaagggtttaacatggttgttgttg 12917382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 15566760 - 15566721
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  15566760 gttgtataattctgaaaaagggtttaaccttgtagttgtt 15566721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17669710 - 17669763
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  17669710 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 17669763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 17758665 - 17758714
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  17758665 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 17758714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 19059985 - 19060034
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  19059985 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 19060034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54875486 - 54875539
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  54875486 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 54875539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3527169 - 3527222
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||    
T  3527169 gggactagctttctctaataatgggttgtatgattttaaaaaggggtttaacat 3527222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6156750 - 6156698
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  6156750 gggactagctttctctaataatgggttgtatgattct-aaaaggggtttaacat 6156698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 40038987 - 40039036
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||| ||||  ||||| |||||||||||||    
T  40038987 agttgttgatgatgaaattacatgttcaatatatgtttatatgtatactt 40039036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10635 - 10485
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10635 gggactagctttctctaaagatgg-ttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 10537  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  10536 tatacttgtgtttttgctcaaaattggcgaagtataatgttgttgttgatga 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 34958385 - 34958234
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34958385 gggactagctttctctaaagatgagttgtataattctgaaaaaggatttaacattgtagttgttgatgatgaatttacatgctcaagttagatatatatg 34958286  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  34958285 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 34958234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 831862 - 832012
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  831862 gggactagttttctctaaagatgggttgtacaattctaaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 831961  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  831962 tatacttgtgt-tttgctcaaaatgggtgaagtataatgttgttgttgatga 832012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 1197042 - 1197192
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    |||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1197042 gggactagttttctctaaagatgggttgtacaattctaaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 1197141  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  1197142 tatacttgtgt-tttgctcaaaatgggtgaagtataatgttgttgttgatga 1197192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 4690917 - 4691011
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||    
T  4690917 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtataatgttgttgttgatga 4691011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 47095248 - 47095154
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  47095248 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 47095154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 18079554 - 18079648
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||    
T  18079554 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaaatataatgttattgttgatga 18079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 43745452 - 43745358
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  43745452 agttgttgatgatgaatttatatggtcaagttatgtatatatgtatacttgagtttttgctcaaaattggtgaagtataatgttgttgttgatga 43745358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 20252446 - 20252538
Alignment:
Q  61 tgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatgat 153  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  20252446 tgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgttttttatgat 20252538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 15575905 - 15575991
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||    
T  15575905 agttgttgatgatgaatttatctgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattcgtgaagtatgatgttgtt 15575991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 18874922 - 18875003
Alignment:
Q  63 ttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||    
T  18874922 ttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtatttttgctcaaaattggtgaagtatgatgttgtt 18875003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 20252195 - 20252257
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  20252195 ggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgtt 20252257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 708441 - 708502
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttg 62  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||    
T  708441 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttg 708502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15575661 - 15575725
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||    
T  15575661 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtacttgttg 15575725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43745696 - 43745632
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| ||||||||||| |||||||||||||||| ||||||||||||    
T  43745696 gggactagctttctctaataatgagttgtataattatgaaaaagggtttaaccttgtagttgttg 43745632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 47095492 - 47095428
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||| |||||||||||||| |||||||| ||||||||||||    
T  47095492 gggactagctttctctaataatgggttgaataattctgaaaaatggtttaaccttgtagttgttg 47095428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8513765 - 8513828
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||    
T  8513765 gggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgtt 8513828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38299788 - 38299738
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaa 51  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  38299788 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaa 38299738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19195651 - 19195588
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  19195651 gggactagctttctctaataatgagttgtataattctg-aaaagggtttaaccttgtagttgttg 19195588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8488106 - 8488169
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||||| || ||||||||    
T  8488106 gggactaactttctctaataatgggttgtataattctaaaaaagggtttaaccttatagttgtt 8488169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 18874679 - 18874740
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaa--gggtttaacattgtagttg 62  Q
    ||||||||||||||||  |||||||||||||||||||||||  ||||||||| |||||||||    
T  18874679 gactagctttctctaataatgggttgtataattctgaaaaaaggggtttaaccttgtagttg 18874740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 3192149 - 3192227
Alignment:
Q  75 ttacatgctcaagttatgtatatatgtatacttgtgtgtttgc--tcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||||| | ||| ||||||||||||| ||||||| |  ||||||||||||||  |||||||||||||||||||    
T  3192149 ttacatgctcaagatgtgtgtatatgtatactt-tgtgttttcattcaaaattgatgaaaaataatgttgttgttgatga 3192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 48212984 - 48213063
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||||||||||||| |||||||||               ||||||||||||||||||||||||||||||||||||    
T  48212984 agttgttgatgatgaatttatatgctcaagttatatatatatgt---------------ctcaaaattgatgaagtataatgttgttgttgatga 48213063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4690699 - 4690738
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  4690699 gttgtataattctgaaaaagggtttaaccttgtagttgtt 4690738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 43276756 - 43276818
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||| ||||||||||  |||||||||||||||||| |||| |||||||| |||||||||||    
T  43276756 gggactaactttctctaataatgggttgtataattctg-aaaatggtttaaccttgtagttgtt 43276818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 58425 - 58478
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  58425 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 58478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16250234 - 16250287
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||| ||||||||||  ||| ||||||||||| ||||||||||||||||||    
T  16250234 gggactaactttctctaataatgagttgtataattttgaaaaagggtttaacat 16250287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 19070053 - 19070012
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatat 99  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  19070053 agttgttgatgatgaaattacatgctcaagttatatatatat 19070012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 19283094 - 19283030
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaa--gggtttaacattgtagttgttg 65  Q
    ||||| ||||||||||  |||||||||||||||||||||||  ||||||||||| || |||||||    
T  19283094 gactaactttctctaagaatgggttgtataattctgaaaaagggggtttaacatggttgttgttg 19283030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33556117 - 33556170
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  33556117 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 33556170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 13315096 - 13315147
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||| ||||||||||  ||||||||||| |||||||||| |||||||||||    
T  13315096 gactatctttctctaataatgggttgtatgattctgaaaaggggtttaacat 13315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 16368427 - 16368522
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt-gtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||| ||||||||||| |||||| ||| |  | | |||| |||||||||| |||| ||  ||||||||||||||| ||||| ||||||||||||||    
T  16368427 agttattgatgatgaaattacatactctatatgtatatacatgtatactttgtgttttcactcaaaattgatgaaatataacgttgttgttgatga 16368522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 36300655 - 36300706
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  36300655 gactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 36300706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 15700897 - 15700951
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgt 57  Q
    ||||||||||||||||  ||| ||||||| ||||| |||| ||||||||||||||    
T  15700897 gactagctttctctaataatgagttgtatgattctaaaaaggggtttaacattgt 15700951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25943307 - 25943253
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacatt 55  Q
    ||||||||||||||||||  |||||||||||  || |||||| ||||||||||||    
T  25943307 gggactagctttctctaataatgggttgtatgtttttgaaaaggggtttaacatt 25943253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 42565872 - 42565910
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  42565872 tataattctgaaaaagggtttaatcttgtagttgttgat 42565910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13744522 - 13744575
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||| ||| ||||| |||| |||||||||||    
T  13744522 gggactagctttctctaataatgggttttatgattctaaaaaggggtttaacat 13744575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 15700750 - 15700810
Alignment:
Q  4 actagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||  |||||||||||  |||| |||| |||||||||| |||||||||||    
T  15700750 actagctttctctaataatgggttgtatggttctaaaaaggggtttaaca-tgtagttgttg 15700810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15720819 - 15720766
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    |||||||||||||||| |  ||||||||||| ||||| |||| |||||||||||    
T  15720819 gggactagctttctctcataatgggttgtatgattctaaaaaggggtttaacat 15720766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 16383874 - 16383825
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||| | |||||||||||||    
T  16383874 agttgttgatgatgaaattacatgctcaatatatttttatatgtatactt 16383825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 17143062 - 17142918
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 100  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17143062 gggaatagctttctctaaagatgagttgtataattctgaaaaggggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatg 17142963  T
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttg 145  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||    
T  17142962 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttg 17142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 15747787 - 15747935
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatttacatgctcaagttatgtatatatgta 102  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15747787 gactaactttctctaaagatgagttgtataattctgaaaaagggtttaacattgtagttgttgatgatgaatatacatgctcaagttatgtatatatgta 15747886  T
Q  103 tacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  15747887 tacttgtgt-tttgctcaaaattggtgaagtataatgttgatgttgatga 15747935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 2424643 - 2424737
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2424643 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 2424737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 10237326 - 10237416
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttg 148  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10237326 agttgttgatgaagaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttattgttg 10237416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 14630933 - 14630839
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  14630933 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 14630839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 26446003 - 26445909
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26446003 agttgttgatgatgaatttatattctcaagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 26445909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25513891 - 25513827
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  25513891 gggactagctttctctaataatgagttgtataattctgaaaaagggtttaacattgtagttgttg 25513827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 14631173 - 14631111
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  14631173 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 14631111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9639050 - 9638984
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||||||||||  ||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  9639050 gggactagctttctctaataatgagttgtgtaattctgaaaaagggtttaaccttgtagttgttgat 9638984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 33186941 - 33186880
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| |||| ||||||    
T  33186941 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtggttgtt 33186880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16296978 - 16296914
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||| | ||||||||||    
T  16296978 gggactagctttctctaataatgagttgtataattctgaaaaagggtttaacctggtagttgttg 16296914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35660996 - 35660932
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||||||||||||||| ||||||| |||||||| ||||||||||||    
T  35660996 gggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttgtagttgttg 35660932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 16025917 - 16025968
Alignment:
Q  101 tatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  16025917 tatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 16025968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 26446246 - 26446183
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||||  ||||||||||||    
T  26446246 ggactagctttctctaataatgggttgtataattctgaaaaatggtttaatcttgtagttgttg 26446183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12424302 - 12424367
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctg--aaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||||||||||| |||||||||||    
T  12424302 gggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgtt 12424367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 15213681 - 15213730
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  15213681 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 15213730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 54363351 - 54363400
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  54363351 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 54363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13847239 - 13847193
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggttt 49  Q
    ||||||||||||||||  ||||||||||||||||| ||||| |||||    
T  13847239 gactagctttctctaataatgggttgtataattctaaaaaatggttt 13847193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9622529 - 9622476
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||| | ||||| |||| |||||||||||    
T  9622529 gggactagctttctctaataatgggttgtctgattctaaaaaggggtttaacat 9622476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10273423 - 10273370
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||| ||||||    
T  10273423 gggactagctttctctaataatgggttgtatgattctaaaaaggggtataacat 10273370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 15239830 - 15239879
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaac 52  Q
    ||||||||||||||||  |||  |||||||| ||||||||||||||||||    
T  15239830 gactagctttctctaataatgaattgtataaatctgaaaaagggtttaac 15239879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 19622239 - 19622288
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    ||||||| |||||||| ||||||||||||  ||||| |||||||||||||    
T  19622239 agttgttaatgatgaaattacatgctcaatatatgtttatatgtatactt 19622288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 55583236 - 55583183
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||| | |||| |||||||||||    
T  55583236 gggactagctttctctaataatgggttgtatgattataaaaaggggtttaacat 55583183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 15974 - 15880
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  15974 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttactcaaaattgatgaagtataatattgttgttgatga 15880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 18313 - 18251
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  18313 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 1627324 - 1627418
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1627324 agttgttgatgatgaatttatatgctcaagttatctatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttgttgatga 1627418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 18744677 - 18744583
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  18744677 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 18744583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 660586 - 660499
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttg 145  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  660586 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattgatgaagtataatgttgttg 660499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 23199463 - 23199549
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||| |||||||| ||||||||    
T  23199463 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgcatttttgctcaaaattggtgaagtatgatgttgtt 23199549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 18744914 - 18744851
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  18744914 gggactaactttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 18744851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23199219 - 23199282
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||    
T  23199219 gggactagctttctctaataatgggttgtataattctgaaaaatggtttaaccttgtagttgtt 23199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16063791 - 16063727
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||| ||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||    
T  16063791 gggactacctttctctaataatgggttgtataattctaaaaaagggtttaaccttgtagttgttg 16063727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 660829 - 660766
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  | ||||||||||||||||||||| |||||||| ||||||||||||    
T  660829 gggactagctttctctaataaggggttgtataattctgaaaaa-ggtttaaccttgtagttgttg 660766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6551326 - 6551366
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6551326 gttgtataattctgaaaaagggtttaaccttgtagttgttg 6551366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32607328 - 32607381
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  32607328 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 32607381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 20822819 - 20822732
Alignment:
Q  65 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  20822819 gatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 20822732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 28476990 - 28477084
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  28476990 agttgttgatgatgaatttatatgctcaagttatgtatatatgtataattgtgtttttgctcaaaattggtgaagtataatgttgttgttgatga 28477084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 20836630 - 20836536
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||    
T  20836630 agttcttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtagaatgtggttgtttatga 20836536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 24719766 - 24719852
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  24719766 agttgttgatgatgaatttatatgttcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 24719523 - 24719585
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  24719523 ggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 24719585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 50544910 - 50544848
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  50544910 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 50544848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38056684 - 38056748
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||    
T  38056684 gggactagctttctctagtaatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 38056748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 12710680 - 12710627
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgt 111  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12710680 agttgttgatgatgaatttacatattcaagttatgtatatatgtatacttgtgt 12710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12710907 - 12710843
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||  ||||||||||||    
T  12710907 gggactagctttctctaatattgggttgtataattctgaaaaagggtttaatcttgtagttgttg 12710843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22145678 - 22145742
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||| ||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||    
T  22145678 gggactaactttctctaataatgggttgtttaattctgaaaaagggtttaaccttgtagttgttg 22145742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28476746 - 28476810
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||| |||||||||  ||| |||||||||||||||||||||||||||| ||||||||||||    
T  28476746 gggactagatttctctaataatgagttgtataattctgaaaaagggtttaaccttgtagttgttg 28476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 17901808 - 17901859
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  17901808 gactagctttctctaataatgggttgtataattctgaaaaagggtttaacat 17901859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 6834213 - 6834152
Alignment:
Q  4 actagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||  ||| |||||||||||||||||||||||||||||| || |||||||    
T  6834213 actagctttctctaataatgagttgtataattctgaaaaagggtttaacatggttgttgttg 6834152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 8276003 - 8276067
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    |||||||||| |||||  ||| || ||||||||||||||||||||||||| ||||||||||||||    
T  8276003 gactagctttatctaataatgagtggtataattctgaaaaagggtttaaccttgtagttgttgat 8276067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8306646 - 8306593
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||||||||| |||| |||||||||||    
T  8306646 gggactagctttctctaataatgggttgtataattctaaaaaggggtttaacat 8306593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 35895138 - 35895086
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||| |||||  ||||||||||| ||||||||||||| ||||||||    
T  35895138 ggactagctttatctaataatgggttgtatgattctgaaaaaggttttaacat 35895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 34392806 - 34392755
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  34392806 gactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 34392755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 635018 - 635064
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggttt 49  Q
    ||||||||||||||||  || |||||||||||||| |||||||||||    
T  635018 gactagctttctctaataataggttgtataattctaaaaaagggttt 635064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 39061333 - 39061295
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  39061333 tataattctgaaaaaaggtttaaccttgtagttgttgat 39061295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 41931308 - 41931354
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtata 104  Q
    |||||||||||||||| ||||||| ||||||||| ||||||| ||||    
T  41931308 agttgttgatgatgaaattacatgttcaagttatatatatatatata 41931354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 1818 - 1724
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  1818 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 2058 - 1996
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  2058 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 1996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 186450 - 186544
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  186450 agttgctgatgatgaatttacatgctcaagatatgtatatatgtatacttgtgtttttgctcaaaatttgtgaagtataatgttgttgttgatga 186544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 186210 - 186272
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  186210 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 186272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 7578 - 7667
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgtt 147  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  7578 agttgttgatgatgaatttacatgttcaagttatgtgtatatgtatacttgtgtttttgctcaaaattggtgaagtataatgttgttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 5341 - 5381
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  5341 gttgtataattcttaaaaagggtttaaccttgtagttgttg 5381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 3678 - 3772
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||    
T  3678 agttgttgaagatgaatttacatgcttaagttatgtatatatgtatacttgtgtttttgcttaaaattggtgaactataatgttgttgttgatga 3772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3434 - 3498
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| ||||||| |||||||||||||||||||| ||||||||||||    
T  3434 gggactagctttctctaataatgcgttgtatgattctgaaaaagggtttaaccttgtagttgttg 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 21315734 - 21315820
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  21315734 agttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21315820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 29114559 - 29114465
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||| ||||||||| ||||||||||    
T  29114559 agttgttgatgatgaatttacatgctcaagttatgtataaatgtatacttgtgtttttactcaaaattggtgaaatataatgttattgttgatga 29114465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 21369088 - 21369002
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  21369088 agttgttgttgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 21369002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 21335524 - 21335610
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||    
T  21335524 agttgttgatgatgaatttatatgctcaagttatgtatatatatatacttgtgtttttgcacaaaattggtgaagtatgatgttgtt 21335610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21315488 - 21315551
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  21315488 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 21315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21335278 - 21335341
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  21335278 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgtt 21335341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 23610414 - 23610356
Alignment:
Q  60 ttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgct 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  23610414 ttgttgatgatgaatttatatgctcaagttatgtatatatgtatacttgtgtttttgct 23610356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21369333 - 21369273
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagtt 61  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  21369333 gggacaagctttctctaacaatgggttgtataattctgaaaaagggtttaaccttgtagtt 21369273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23610666 - 23610602
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||||||||||||||| ||||||| |||||||| || |||||||||    
T  23610666 gggactagctttctctaataatgggttgtataattatgaaaaatggtttaaccttctagttgttg 23610602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23801536 - 23801483
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  23801536 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 23801483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 34491276 - 34491316
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  34491276 gttgtataattctgaaaaagggtttaacatggttgttgttg 34491316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 15872 - 15965
Alignment:
Q  59 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||| ||| ||||||||||    
T  15872 gttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtttttacttaaaattggtgaagtataacgttattgttgatga 15965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 15637 - 15691
Alignment:
Q  11 ttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||  |||| |||||| ||||| |||||||||||||| ||||||||||||    
T  15637 ttctctaataatggtttgtatgattctaaaaaagggtttaaccttgtagttgttg 15691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 24138 - 24224
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  24138 agttcttgatgatgaattcatatgctcaagttatgtatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 24224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 20410766 - 20410852
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||    
T  20410766 agttgttgatgatgaatttatatgctcgagttatgtatataagtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 20410852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21683087 - 21683151
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||    
T  21683087 gggactagctttctctaataatgggttgtataattcagaaaaagggtttaaccttgtagttgttg 21683151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 17856515 - 17856610
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||| || | | ||||||||||||  || ||||||||||||||||    
T  17856515 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcgtttaaaattgatgaaaaattatgttgttgttgatga 17856610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 23658129 - 23658066
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||| ||||  || ||||||||||||||||||||||||||||| |||||||||||    
T  23658129 gggactagctttccctaataataggttgtataattctgaaaaagggtttaaccttgtagttgtt 23658066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 19825500 - 19825562
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||| |||||||||||||||| |||||| ||||||||||||    
T  19825500 gactagctttctctaataatgggttgcataattctgaaaaaggttttaaccttgtagttgttg 19825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 20410529 - 20410587
Alignment:
Q  6 tagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||| |||||||||||    
T  20410529 tagctttctctaataatgggttgtataattctgaaaaaggatttaaccttgtagttgtt 20410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 18982592 - 18982548
Alignment:
Q  21 atgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  18982592 atgggttgtataattctgaaaaagggtttaaccttgtagttgttg 18982548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 29045309 - 29045258
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  29045309 gactagctttctctaataatgggttgtataattttgaaaaagggtttaacat 29045258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10446257 - 10446204
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||||||    
T  10446257 gggactagctttctctaataatgggttgtatgattctaaaaaggggtttaacat 10446204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 16386580 - 16386528
Alignment:
Q  98 atgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatg 151  Q
    |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||    
T  16386580 atgtatacttgtgt-ttcgctcaaaattgatgaagaataatattgttgttgatg 16386528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 15998905 - 15998865
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  15998905 gttgtataattctgaaaaagagtttaaccttgtagttgttg 15998865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 24506155 - 24506193
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  24506155 tataattctgaaaaagggtttaattttgtagttgttgat 24506193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 18196 - 18284
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtata--tatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  18196 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 18284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17976 - 18016
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  17976 gttgtataattctgaaaaaggatttaaccttgtagttgttg 18016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 62107 - 62195
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtata--tatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  62107 agttgttgatgatgaatttatatgctcaagttatgtatatatatgtatacttgtgtttttgctcaaaattggtgaagtatgatgttgtt 62195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 11023 - 11118
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatac-ttgtgtgtttgctcaaaattgatgaagtataatgttgttgttgatga 152  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||| |||||| ||  ||||||||||||||| ||||||||||||||||||||    
T  11023 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactttgtgttttcactcaaaattgatgaaatataatgttgttgttgatga 11118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2921 - 2857
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  2921 gggactagctttctctaataatgggttgtataattctgaaaaagggtttaaccttgtagttgttg 2857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 14600 - 14662
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||    
T  14600 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttg 14662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 23658 - 23720
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||    
T  23658 gactagctttctctaataatgggttgtataattctgaaaaagggtttaaatttgtagttgttg 23720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 11416 - 11504
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatg--tatatatgtatacttgtgtgtttgctcaaaattgatgaagtataatgttgtt 144  Q
    |||||||||||||||| ||| ||| ||||||||||  ||||||||||||||||| | |||||||||||||| | |||||| ||||||||    
T  11416 agttgttgatgatgaacttatatgttcaagttatgcatatatatgtatacttgtatttttgctcaaaattggtcaagtatgatgttgtt 11504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11172 - 11221
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggttta 50  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||||||    
T  11172 gggactagctttctctaataatgggttgtatgattctaaaaaggggttta 11221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2287 - 2223
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||||||||| || |||||||    
T  2287 gggactagctttctataataatgggttgtataattctgaaaaagggtttaacatagttgttgttg 2223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13989 - 13925
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||| ||| ||||||||    
T  13989 gggactagctttctctaataatgggttgtaaaattctgaaaaagggtttaaccttgaagttgttg 13925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11656 - 11592
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||| || |||||||    
T  11656 gggactaaatttctctaaaaatgggttgtataattctgaaaaagggtttaacatcgttgttgttg 11592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5494 - 5445
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggttta 50  Q
    ||||||| ||||||||||  ||| ||||||||||||||||||||||||||    
T  5494 gggactacctttctctaataatgagttgtataattctgaaaaagggttta 5445  T

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Target: scaffold0174; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 19895 - 19843
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||| |||||||||  ||||||||||| ||||| |||| |||||||||||    
T  19895 ggactagatttctctaataatgggttgtatgattctaaaaaggggtttaacat 19843  T

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Target: scaffold0231 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 17534 - 17597
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||| |||||  |||| ||||||||||||||||||||||||||| ||||||||||||    
T  17534 ggactagctttttctaataatggattgtataattctgaaaaagggtttaaccttgtagttgttg 17597  T

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Target: scaffold0231; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 17777 - 17822
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtat 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  17777 agttgttgatgatgaatttatatgctcaagttatgtatatatgtat 17822  T

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Target: scaffold0431 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5673 - 5608
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctga--aaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||||  |||||||||||||||||||  ||||||||||||| |||||||||||    
T  5673 gggactagctttctctaataatgggttgtataattctgaaaaaaagggtttaactttgtagttgtt 5608  T

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Target: scaffold0247 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 1114 - 1052
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||| |||||| |||||    
T  1114 gactagctttctctaataatggattgtataattctgaaaaagggtttaaccttgtagatgttg 1052  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 16451 - 16495
Alignment:
Q  21 atgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  16451 atgggttgtataattctgaaaaagggtttaaccttgtagttgttg 16495  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 18721 - 18777
Alignment:
Q  9 ctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||  ||| ||||||||||||| ||||| |||||| | ||||||||||||    
T  18721 ctttctctaataatgagttgtataattcttaaaaacggtttagccttgtagttgttg 18777  T

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Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 66084 - 66148
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||| ||||| |||  |||||||||||||||||||||||||||||||||| || |||||||    
T  66084 gggactagatttctttaataatgggttgtataattctgaaaaagggtttaacatggttgttgttg 66148  T

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Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 111396 - 111344
Alignment:
Q  5 ctagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgt 57  Q
    ||||||||||||||  ||||||||||| ||||| |||| ||||||||||||||    
T  111396 ctagctttctctaataatgggttgtatgattctaaaaaggggtttaacattgt 111344  T

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Target: scaffold0004; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 75977 - 75924
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||| ||  ||||||||||| ||||| |||| |||||||||||    
T  75977 gggactagctttctccaataatgggttgtatgattctaaaaaggggtttaacat 75924  T

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Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 11169 - 11120
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||    
T  11169 agttgttgatgatgaaattacatgctcaagatgtgtatatatgtatactt 11120  T

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Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 35201 - 35262
Alignment:
Q  4 actagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||| ||||  ||||||||||||||||| |||||||||||||||| || |||||||    
T  35201 actagctttccctaataatgggttgtataattctaaaaaagggtttaacatggttgttgttg 35262  T

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Target: scaffold0086; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 35358 - 35411
Alignment:
Q  11 ttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||| |||||||| ||||||||||||| |||||||||||| || |||||||    
T  35358 ttctctaatgatgggtt-tataattctgaaatagggtttaacatggttgttgttg 35411  T

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Target: scaffold0086; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 35507 - 35560
Alignment:
Q  11 ttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||| |||||||| ||||||||||||| |||||||||||| || |||||||    
T  35507 ttctctaatgatgggtt-tataattctgaaatagggtttaacatggttgttgttg 35560  T

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Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 26744 - 26703
Alignment:
Q  24 ggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  26744 ggttgtataattctgaaaaagggtttaactttgtagttgttg 26703  T

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Target: scaffold1256 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 2236 - 2276
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  2236 gttgtataattctgaaaaagggtttaaccttgtagttgttg 2276  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 19223 - 19184
Alignment:
Q  25 gttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  19223 gttgtataattctgaaaaagggtttaaccttgtagttgtt 19184  T

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Target: scaffold0853 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2466 - 2508
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaa 43  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  2466 gggactagctttctctaataatgggttgtataattctgaaaaa 2508  T

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Target: scaffold0058 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 59695 - 59733
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  59695 tataattctgaaaaagggtttaactttgtagttgttgat 59733  T

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Target: scaffold1204 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 148 - 197
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  148 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 197  T

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Target: scaffold0730 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6517 - 6570
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||| ||||||||||  ||||||||||| |||||||||| |||||||||||    
T  6517 gggactacctttctctaataatgggttgtatgattctgaaaaggggtttaacat 6570  T

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Target: scaffold0505 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4976 - 4912
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaa-cattgtagttgttg 65  Q
    ||||||||||||||||||  |||| ||||||||||||| |||||||||||| | ||||||||||||    
T  4976 gggactagctttctctaataatgg-ttgtataattctgtaaaagggtttaacctttgtagttgttg 4912  T

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Target: scaffold0452 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0452
Description:

Target: scaffold0452; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 2843 - 2892
Alignment:
Q  58 agttgttgatgatgaatttacatgctcaagttatgtatatatgtatactt 107  Q
    |||||||||||||||| ||||||||||||  ||||| |||||||||||||    
T  2843 agttgttgatgatgaaattacatgctcaatatatgtttatatgtatactt 2892  T

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Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18652 - 18717
Alignment:
Q  1 gggactagctttctctaaagatgggttgta-taattctgaaaaagggtttaacattgtagttgttg 65  Q
    ||||||||||||||||||  ||| |||||| ||||| ||||||| |||||||| ||||||||||||    
T  18652 gggactagctttctctaataatgagttgtaataattttgaaaaaaggtttaaccttgtagttgttg 18717  T

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Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 6456 - 6395
Alignment:
Q  3 gactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgtt 64  Q
    ||||||||||||||||  ||| ||||| |||||||||||||||| ||||  |||||||||||    
T  6456 gactagctttctctaataatgagttgtgtaattctgaaaaagggattaatcttgtagttgtt 6395  T

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Target: scaffold0139 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 23573 - 23510
Alignment:
Q  2 ggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||  ||||||||||||| ||| |||| ||||| ||| ||| ||||||||    
T  23573 ggactagctttctctaataatgggttgtataaatctaaaaaggggttaaaccttgcagttgttg 23510  T

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Target: scaffold0379 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 10984 - 10935
Alignment:
Q  4 actagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  10984 actagctttctctaataatgggttgtatgattct-aaaaagggtttaacat 10935  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 17118 - 17080
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  17118 tataattcttaaaaagggtttaactttgtagttgttgat 17080  T

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Target: scaffold0021; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 26649 - 26611
Alignment:
Q  29 tataattctgaaaaagggtttaacattgtagttgttgat 67  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  26649 tataattcttaaaaagggtttaactttgtagttgttgat 26611  T

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Target: scaffold0819 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0819
Description:

Target: scaffold0819; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 5269 - 5228
Alignment:
Q  24 ggttgtataattctgaaaaagggtttaacattgtagttgttg 65  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  5269 ggttgtataattctgaaacagggtttaacatggttgttgttg 5228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 10487 - 10520
Alignment:
Q  31 taattctgaaaaagggtttaacattgtagttgtt 64  Q
    |||| |||||||||||||||||||||||||||||    
T  10487 taatcctgaaaaagggtttaacattgtagttgtt 10520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 127355 - 127408
Alignment:
Q  1 gggactagctttctctaaagatgggttgtataattctgaaaaagggtttaacat 54  Q
    ||||||||||||||||||  |||| |||||| ||||| |||| |||||||||||    
T  127355 gggactagctttctctaataatggattgtatgattctaaaaaggggtttaacat 127408  T

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