View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0713_low_8 (Length: 524)
Name: NF0713_low_8
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0713_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 31 - 511
Target Start/End: Complemental strand, 41620790 - 41620309
Alignment:
| Q |
31 |
aatcaaccaacactgatacagcataattgttcgcgtaacacagcagaattagagtgtgttataatcaccgtcaatccaaacattcactagaacaagatag |
130 |
Q |
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| T |
41620790 |
aatcaaccaacactgatacagcataattgttcgcataacacagcagaattagagtgtgttacattcaccgtcaatccaaacattcactagaacaagatag |
41620691 |
T |
|
| Q |
131 |
gggctatattaactgttgccatgcacataaaacattcactaaattaagataggggctatattaactgctgccatgcacattttaaattctgagatgttca |
230 |
Q |
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| T |
41620690 |
gggctatattaactgttgccatgcacataaaacattcactaaattaagataggggctatattaactgctgccatgcacattttaaattctgagatgttca |
41620591 |
T |
|
| Q |
231 |
attctgaatccaacatcaaaacggggg-caacaatcgcaaaggtattttccctccaactaaaccaatactattaccacaatttgccgtcatcaacacact |
329 |
Q |
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| T |
41620590 |
attctgaatccaacatcaaaacggggggcaacaatcgcaaaggtattttccctccaactaaaccaatactattaccacaatttgccgtcatcaacacact |
41620491 |
T |
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| Q |
330 |
tcctgcaattgatgagctacactaacagtttctggttcatacattagactcgcgtccatctaaaatattgaatcatgatatataaatgaaaccaaatagc |
429 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41620490 |
tcctgcaattgatgagctacactaacaggttctggttcatacattagactcacgtccatctaaaatattgaatcctgatatataaatgaaaccaaatagc |
41620391 |
T |
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| Q |
430 |
acatggaaaacaaaattattcagaacatcacatgtttgttttttctttgaagaaagaacatcatacgtttgtacaatcatat |
511 |
Q |
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| T |
41620390 |
acatggaaaacaaaattattcagaacatcacatgtttgttttttctttgaagaaagaacgtcatacgtttgtacaatcatat |
41620309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 30494302 - 30494390
Alignment:
| Q |
327 |
acttcctgcaattgatgagctacactaacagtttctggttcatacattagactcgcgtccatctaaaatattgaatcatgatatataaatgaaa |
420 |
Q |
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| T |
30494302 |
acttcctgcaattgatgagctgca-----aggttctgattcattcatttgacgcacatccatctgaaatattgaatcacgatatataaatgaaa |
30494390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 327 - 420
Target Start/End: Original strand, 30534645 - 30534733
Alignment:
| Q |
327 |
acttcctgcaattgatgagctacactaacagtttctggttcatacattagactcgcgtccatctaaaatattgaatcatgatatataaatgaaa |
420 |
Q |
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| T |
30534645 |
acttcctgcaattgatgagctgca-----aggttctgattcattcatttgacgcacatccatctgaaatattgaatcacgatatataaatgaaa |
30534733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 30493663 - 30493717
Alignment:
| Q |
392 |
aaatattgaatcatgatatataaatgaaa--ccaaatagcacatggaaaacaaaa |
444 |
Q |
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| T |
30493663 |
aaatattgaatcatgatatgtaaatgaaaagctaaatagcacatagaaaacaaaa |
30493717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 30534006 - 30534060
Alignment:
| Q |
392 |
aaatattgaatcatgatatataaatgaaa--ccaaatagcacatggaaaacaaaa |
444 |
Q |
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||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| |
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| T |
30534006 |
aaatattgaatcatgatatgtaaatgaaaagctaaatagcacatagaaaacaaaa |
30534060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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