View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0713_low_9 (Length: 514)

Name: NF0713_low_9
Description: NF0713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0713_low_9
NF0713_low_9
[»] chr6 (4 HSPs)
chr6 (90-270)||(13123336-13123513)
chr6 (361-470)||(13115497-13115604)
chr6 (287-331)||(13123295-13123339)
chr6 (276-332)||(20891677-20891733)
[»] scaffold0338 (1 HSPs)
scaffold0338 (279-332)||(18667-18720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (273-325)||(71415-71468)
[»] chr8 (1 HSPs)
chr8 (279-332)||(15061947-15062000)
[»] chr4 (1 HSPs)
chr4 (89-133)||(24474409-24474453)
[»] scaffold0171 (1 HSPs)
scaffold0171 (232-270)||(2732-2770)
[»] chr2 (1 HSPs)
chr2 (273-333)||(16592321-16592382)
[»] chr3 (1 HSPs)
chr3 (176-270)||(2278284-2278379)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 90 - 270
Target Start/End: Complemental strand, 13123513 - 13123336
Alignment:
Q  90 catcatcatattctcaaattatgcataagttggttttcataaaacttgcagcagaataatcatcatacataattaggtctgatcacatacataataatag 189  Q
    ||||||||||||||||||  |||||||| ||||||||||| | ||||||||| ||| |||||||||||||||||||||||   |||||||||||||||||    
T  13123513 catcatcatattctcaaaacatgcataaattggttttcattatacttgcagcggaaaaatcatcatacataattaggtct---cacatacataataatag 13123417  T
Q  190 tctcagcagataaatccataaacaaataaatgacataaaacaaaagttccgacactcccaaatcagagcctaactagactc 270  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  13123416 tctcagcagataaatccataaacaaataaacgacataaaacaaaagtcccgacactcccatatcagagcctaactagactc 13123336  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 13115604 - 13115497
Alignment:
Q  361 catccacatttgagatagaatatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcctaaggacatgattgaatta 460  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  13115604 catccacatttgagaaa--atatgtggctttgcaatatatccttccatgcctataaattggttgaactacttgatggctcccaaggacaagattgaatta 13115507  T
Q  461 ttcgtatcta 470  Q
    ||||||||||    
T  13115506 ttcgtatcta 13115497  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 13123339 - 13123295
Alignment:
Q  287 actccaagttaatcctcaagccctcacaagcaataagaaatcaat 331  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  13123339 actccaagttaatcctcaagcactcacaagcaataagaaatcaat 13123295  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 20891677 - 20891733
Alignment:
Q  276 gataagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 332  Q
    ||||||||||| ||||||| || ||||| ||  ||||||||||||||||||||||||    
T  20891677 gataagaggtagctccaagctagtcctcgagtactcacaagcaataagaaatcaatc 20891733  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 18720 - 18667
Alignment:
Q  279 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 332  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||| ||||||    
T  18720 aagaggtaactccaagctaatcctcaagcactcacaagaaataagaactcaatc 18667  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 71468 - 71415
Alignment:
Q  273 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaa 325  Q
    ||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||    
T  71468 aaagataaggaggtagctccaagctaatcctcaagcactcacaagcaataagaa 71415  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 15061947 - 15062000
Alignment:
Q  279 aagaggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatc 332  Q
    |||||||| ||||||| |||||||||||| ||||||||||||| ||| ||||||    
T  15061947 aagaggtagctccaagctaatcctcaagcactcacaagcaataggaactcaatc 15062000  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 24474453 - 24474409
Alignment:
Q  89 acatcatcatattctcaaattatgcataagttggttttcataaaa 133  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||    
T  24474453 acatcttcattttctcaaattatgcataaattggttttcataaaa 24474409  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 2732 - 2770
Alignment:
Q  232 aaagttccgacactcccaaatcagagcctaactagactc 270  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  2732 aaagtcccgacactcctaaatcagagcctaactagactc 2770  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 16592382 - 16592321
Alignment:
Q  273 aaagataag-aggtaactccaagttaatcctcaagccctcacaagcaataagaaatcaatcc 333  Q
    ||||||||| ||||| |||||| |||| |||||||| ||||| ||||||||||| |||||||    
T  16592382 aaagataaggaggtagctccaaattaaccctcaagcactcactagcaataagaactcaatcc 16592321  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 2278284 - 2278379
Alignment:
Q  176 atacataataatagtctcagcagataaatccataaacaaataaatgacataaaacaaa---agttccgacactcccaaatcagagcctaactagactc 270  Q
    ||||||| | ||||||||||||  ||||||||| | || ||||| |||| |||| |||   ||| | |||||||| ||||||||||||||||||||||    
T  2278284 atacatagtcatagtctcagca--taaatccatcatcagataaaagacacaaaagaaacaaagtcctgacactcctaaatcagagcctaactagactc 2278379  T

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