View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_1 (Length: 464)
Name: NF0714_high_1
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 23 - 346
Target Start/End: Complemental strand, 3396750 - 3396433
Alignment:
| Q |
23 |
atcatcacctgatgtgaaaaggagacggctgtcgattactgtggaagttaagccattgcctaagccatatgaaatcttaacaagacttgtaaagagagtt |
122 |
Q |
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| T |
3396750 |
atcatcacctgatgtgaaaaggagacggctatcgattactgtggaagttaagccattgcctaagccatatgaaatcttaacaagacttgtaaagagagtt |
3396651 |
T |
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| Q |
123 |
ttgctgaaatgtttatgtatgaattagaatagacgttccaacaattttctgttgggcgtacgtacctttgtcatatgtgttttttcaatattttccgtga |
222 |
Q |
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| T |
3396650 |
ttgctgaaatgtttatgtatggattagagtagacgttccaacaattttttgttgggc----gtacctttgtcctttgtg-tttttcaatattttctgtga |
3396556 |
T |
|
| Q |
223 |
acgaagaaaaatagtggcatgttttatatacacagaagagcttatatatgaattgtgtggttattgtttgtttcaaatttcaattaatgtggcaatgaga |
322 |
Q |
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| T |
3396555 |
actaggaaaaatagtggcatgttttatat-cataaaagagtttatatatgaattgtgtggttattgtttgtttcaaatttcaattaatgtggccatgaga |
3396457 |
T |
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| Q |
323 |
tcttgttgagttaatttctcatta |
346 |
Q |
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| T |
3396456 |
ttttgttgagttaatttctcatta |
3396433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 31163642 - 31163721
Alignment:
| Q |
304 |
aattaatgtggcaatgagatcttgttgagttaatttctcattattcaggacctcgcaatttcttaactagacaaggtgtg |
383 |
Q |
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| T |
31163642 |
aattaatgtggcaatgaaatcttgttgagttcatttctcattattcaggacctcaagattgcttaactagacaagatgtg |
31163721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 3396259 - 3396222
Alignment:
| Q |
416 |
tattaatctctagcattgttttccttcatttagttcat |
453 |
Q |
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| T |
3396259 |
tattaatctctagcattgttttccttcatttagttcat |
3396222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 60 - 206
Target Start/End: Original strand, 20813981 - 20814123
Alignment:
| Q |
60 |
actgtggaagttaagccattgcctaagccatatgaaatcttaacaagacttgtaaagagagttttgctgaaatgtttatgtatgaattagaatagacgtt |
159 |
Q |
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| T |
20813981 |
actgtggaagttaagccattgccgaagccatatgaaatcttcacatgacttgtaaagagagttttgctgaaatgtttatgtatgaattagactagacgtt |
20814080 |
T |
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| Q |
160 |
ccaacaattttctgttgggcgtacgtacctttgtcatatgtgttttt |
206 |
Q |
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| T |
20814081 |
ccaacaattttcggttggg----cgtacctttgtcctatgtgttttt |
20814123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 220 - 381
Target Start/End: Original strand, 20814573 - 20814743
Alignment:
| Q |
220 |
tgaacgaagaaaaatagtggcatgttttatatacacagaagagcttatatatgaattgtgtggttattgtttgtttcaaattt--caattaatgtggcaa |
317 |
Q |
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||||||| ||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
20814573 |
tgaacgaggaaaaatagtggcgtgttgtatatacacagaatagcttatatatgaattatgtggttattgtttgtttcaaatttaaaaattaatgtggcaa |
20814672 |
T |
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| Q |
318 |
tgagatct-------tgttgagttaatttctcattattcaggacctcgcaatttcttaactagacaaggtg |
381 |
Q |
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| T |
20814673 |
tgagatcttgttgggtgttgagttaatttctcattattctggacctcgcaattgcttaactagacaaggtg |
20814743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 267 - 381
Target Start/End: Original strand, 20840902 - 20841025
Alignment:
| Q |
267 |
tatatgaattgtgtggttattgtttgtttcaaatttc--aattaatgtggcaatgagatcttgtt-------gagttaatttctcattattcaggacctc |
357 |
Q |
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| T |
20840902 |
tatatgaattatgtggttattgtttgtttcaaatttagaaattaatgtggcaatgagatcttgttgggtgttgagttaatttctcattattctggacctc |
20841001 |
T |
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| Q |
358 |
gcaatttcttaactagacaaggtg |
381 |
Q |
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| T |
20841002 |
gcaattccttaactagacaaggtg |
20841025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 20840437 - 20840498
Alignment:
| Q |
121 |
ttttgctgaaatgtttatgtatgaatt---agaatagacgttccaacaattttctgttgggc |
179 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |
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| T |
20840437 |
ttttgctgaaatgtttatgtatgaattataataatagacgttccaacaattttcggttgggc |
20840498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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