View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_12 (Length: 343)
Name: NF0714_high_12
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 38260973 - 38261227
Alignment:
| Q |
1 |
gcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcacta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38260973 |
gcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactg |
38261072 |
T |
|
| Q |
101 |
caagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactact |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38261073 |
caagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcagattcaaaagctcaatgatggaacaactact |
38261172 |
T |
|
| Q |
201 |
tttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
38261173 |
tttgttcctgttattgcttgtggtgataagtcacatgcttatgtcaatgatgatg |
38261227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 38244673 - 38244927
Alignment:
| Q |
1 |
gcctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcacta |
100 |
Q |
| |
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||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244673 |
gcctaccacacgagaaacatggaccatacccatgttcccaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcacta |
38244772 |
T |
|
| Q |
101 |
caagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
38244773 |
caagttcgaaagtgaagaagacagaaaaaagagatacaattctaggattcgaaagagaccgcgtcttcagattcaaaagctcaatgatggaagaactact |
38244872 |
T |
|
| Q |
201 |
tttgttcctgttattgcttgtggtgataagtcaaatgcttctgtcaatgatgatg |
255 |
Q |
| |
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|||||||||||| ||||||||| |||||||||| ||||||| ||||| |||||| |
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|
| T |
38244873 |
tttgttcctgttgttgcttgtgctgataagtcacatgcttcaatcaataatgatg |
38244927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 47285712 - 47285499
Alignment:
| Q |
3 |
ctaccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactaca |
102 |
Q |
| |
|
||||| ||||| ||| ||||||| ||| | |||||| | ||||||||| || | | ||||||||| ||||| ||| |||||| |||||||||||||| |
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| T |
47285712 |
ctacctcacaataaacatggaccgtacacgtgttcagagtgcaacaaagtaatagcaacatcacagaaattcgctgctcatgt---atcaagtcactaca |
47285616 |
T |
|
| Q |
103 |
agttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttt |
202 |
Q |
| |
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|| |||||||||||||| ||||||||||||||||| |||||||| |||||||| || ||| || |||||||||||| ||||||||||||||||| | |
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| T |
47285615 |
agactgaaagtgaagaagagagaaaaaagagatacatgtctaggatccgaaagagaccatatctccagattcaaaagctcgatgatggaacaactactct |
47285516 |
T |
|
| Q |
203 |
tgttcctgttattgctt |
219 |
Q |
| |
|
|||| |||| ||||||| |
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| T |
47285515 |
tgtttctgtcattgctt |
47285499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 47307265 - 47307067
Alignment:
| Q |
7 |
cacacaagaaatatggaccatacccatgttcaaaatgcaacaaaatatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaagtt |
106 |
Q |
| |
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||||||| ||| |||||||||| | ||| |||| || |||||| || | | |||||||||||||||||||| ||||| |||||| |||||||||| |
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| T |
47307265 |
cacacaataaaaatggaccatatacgtgtccaaagtgtaacaaagtactagcaacatcacaaaaatttgctagtcatg---catcaatacactacaagtc |
47307169 |
T |
|
| Q |
107 |
cgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgtt |
206 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||||||| |||||||| || ||| | | ||||||||||||||||||||||||||||||||| |
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|
| T |
47307168 |
agaaagtgaagaagagaaaaaaaagagatacatgtctaggatccgaaagagaccagatctccgattccaaaagctcaatgatggaacaactacttttgtt |
47307069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 2589674 - 2589546
Alignment:
| Q |
91 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatgg |
190 |
Q |
| |
|
||||||||||||||| |||| | |||||| ||||||||||||||||| |||| ||| |||||||| || ||| | |||||||||||||||||||| |
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| T |
2589674 |
caagtcactacaagtctgaaactctagaagagagaaaaaagagatacatgtctaagatccgaaagagaccaaatctccggattcaaaagctcaatgatgg |
2589575 |
T |
|
| Q |
191 |
aacaactacttttgttcctgttattgctt |
219 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
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|
| T |
2589574 |
aacaactacttttgttccagttgttgctt |
2589546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 2589833 - 2589914
Alignment:
| Q |
126 |
aaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
207 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| || ||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
2589833 |
aaaaagagatacatgtctaggatcccaaagagaccaaatcttcatattcaaaaactcaatgttggaacaacaacttttgttc |
2589914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 208
Target Start/End: Complemental strand, 10299735 - 10299617
Alignment:
| Q |
91 |
caagtcactacaagttcgaaagtgaagaagacagaaaaaa-gagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatg |
189 |
Q |
| |
|
||||||||||||||| |||| | |||||| |||||||| ||||||||| |||| ||| |||||| || ||| || |||||||||||||||||| |
|
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| T |
10299735 |
caagtcactacaagtctgaaactctagaagagagaaaaaaagagatacatgtctatgatctaaaagagaccaaatctccagattcaaaagctcaatgata |
10299636 |
T |
|
| Q |
190 |
gaacaactacttttgttcc |
208 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10299635 |
gaacaactacttttgttcc |
10299617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 22222449 - 22222647
Alignment:
| Q |
6 |
ccacacaagaaatatggaccatacccatgttcaaaatgcaacaaaa-tatttgaaacatcacaaaaatttgctaatcatgtttcatcaagtcactacaag |
104 |
Q |
| |
|
|||||||| ||| ||||| ||||| | ||| |||| |||||||||| || || |||||| ||||||||||||| |||||| ||||||||||||| |
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|
| T |
22222449 |
ccacacaataaacatggatcatacacgtgtgcaaagtgcaacaaaagtaatttcaacatcccaaaaatttgctagtcatgt---ggcaagtcactacaat |
22222545 |
T |
|
| Q |
105 |
ttcgaaagtgaagaagacagaaaaaagagatacatttctaggattcgaaagaggccgcgtcttcatattcaaaagctcaatgatggaacaactacttttg |
204 |
Q |
| |
|
|| |||| | ||||||| ||||||||||||||||| |||||||| | |||||| | ||| || |||||||| ||||||| ||||||||| || |||| |
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|
| T |
22222546 |
tttgaaactcaagaagaaagaaaaaagagatacatgtctaggatcccaaagagaacaaatctgcagattcaaaaactcaatgttggaacaacaacatttg |
22222645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 22222382 - 22222289
Alignment:
| Q |
116 |
agaagacagaaaaaagagatacatttctaggattcgaaagagg--ccgcgtcttcatattcaaaagctcaatgatggaacaactacttttgttc |
207 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| || ||| | ||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
22222382 |
agaagagaaaaaaaagagatacatgtctaggatccgaaagagtgaccaaatctccggattcataagatcaatgatggaacaactacttttgttc |
22222289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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