View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_18 (Length: 296)
Name: NF0714_high_18
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 23915850 - 23915585
Alignment:
| Q |
21 |
acatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaaccca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915850 |
acatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaaccca |
23915751 |
T |
|
| Q |
121 |
ataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatc |
220 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915750 |
ataggagaaggaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatc |
23915651 |
T |
|
| Q |
221 |
agttggggtaattgatagcaataggagaagaagaagaacagaaacaaacaacccacatgctctgtg |
286 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23915650 |
agttggggtaattgatagcaatcggagaagaagaagaacagaaacaaacaacccacatgctctgtg |
23915585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 18989672 - 18989937
Alignment:
| Q |
21 |
acatcatcaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaaccca |
120 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989672 |
acatcaccaattgttgagacatcaaatgagaaagcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaaccca |
18989771 |
T |
|
| Q |
121 |
ataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989772 |
ataggagaagaaaacatagaaacagaaacaaactcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatc |
18989871 |
T |
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| Q |
221 |
agttggggtaattgatagcaataggagaagaagaagaacagaaacaaacaacccacatgctctgtg |
286 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18989872 |
agttggggtaattgatagcaatcggagaagaagaagaacagacacaaacaacccacatgctctgtg |
18989937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 54 - 286
Target Start/End: Complemental strand, 30338768 - 30338536
Alignment:
| Q |
54 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaacattcaatacaacaacccaataggagaagaaaacatagaaacagaaacaaac |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
30338768 |
gcaacctcagttgatcaaaaatgaaatcaagaaaattcaaccctctaaaattcaatacaacaacccaataggagaagaaaacaaagaaacagagacaaac |
30338669 |
T |
|
| Q |
154 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagttggggtaattgatagcaataggagaagaag |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
30338668 |
tcaattgatcagttgtttgttttcagaagaaaaattacctgaggataataattgatagcaattgatcagctggggtaattgatagcaatcagagaagaag |
30338569 |
T |
|
| Q |
254 |
aagaacagaaacaaacaacccacatgctctgtg |
286 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
30338568 |
aagaacataaacaaacaacccacatgctctgtg |
30338536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 26164577 - 26164676
Alignment:
| Q |
54 |
gcaacctcagttgatcaaaaatgaaatcaagaaaa-ttcaaccctctaacattcaatacaacaacccaataggagaagaa-aacatagaaacagaaacaa |
151 |
Q |
| |
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|||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||||||||| |
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| T |
26164577 |
gcaaccacaattgatcaaaaatgaaatcaagaaaaattcaaccctctaaccttcaatacaacaacccaatgggagaagaagaacaaagaaacagaaacaa |
26164676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 26164053 - 26164091
Alignment:
| Q |
21 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
59 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
26164053 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
26164091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 30339201 - 30339163
Alignment:
| Q |
21 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30339201 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
30339163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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