View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_2 (Length: 438)
Name: NF0714_high_2
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 36606144 - 36605795
Alignment:
| Q |
1 |
aagaaatcaaaaaccttcaagatatttgtaaggaaatggcttcgatcaattctctcaaacattcactttccatttctggaaaaaagtctgtttgtgaagt |
100 |
Q |
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| T |
36606144 |
aagaaatcaaaaaccttcaagatatttgtaaggaaatggcttcaatcaattctctcaaacattcactttccatttctggaaaaaagtctgtttgtgaagt |
36606045 |
T |
|
| Q |
101 |
tagtccagcaagcttgccaactaataggcctcataaagttagccagccaaagcttatgtacatctcaactggtgatgacaagttcatggtgagggaaaga |
200 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36606044 |
tagtccagtaagcttgccaaataataggcctcataaagttagccagccaaagcttatgtacatctcaactggtgatgacaagttcatggtgagggaaaga |
36605945 |
T |
|
| Q |
201 |
gtgtcctcagtggctgaaattgcacctctgaatatatctactaaaatttcaagccagaaagttttagaagaagagaagggaatggttttacagaatctag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605944 |
gtgtcctcagtggctgaaattgcacctctgaatatatctactaaaatttcaagccagaaagttttagaagaagagaagggaatggttttacagaatctag |
36605845 |
T |
|
| Q |
301 |
caacagaaaggcctgcttctggccatcttcccccagcttttgatgatgtc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36605844 |
caacagaaaggcctgcttctggccatcttcccccagcttttgatgatgtc |
36605795 |
T |
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