View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_29 (Length: 249)
Name: NF0714_high_29
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_29 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 52984825 - 52984586
Alignment:
| Q |
10 |
agagatgatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgctt |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52984825 |
agagatgatacaggtaagctaacaaatcccatctttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgctt |
52984726 |
T |
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| Q |
110 |
atgcgtttcttctagtttgatgtttgggtattgttagaacttttattggggggttgctgcaaaaaccaaagataagaagaagaagatgatgatgttagag |
209 |
Q |
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| T |
52984725 |
atgcgtttcttctagtttgatgtttgggtattgttagaacttttattggggggttgctgcaaaaaccaaagataagaagaagaagatgatgatgttagag |
52984626 |
T |
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| Q |
210 |
ttgttagtattgcatgaagaaattccaaaacgtgtaacac |
249 |
Q |
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| T |
52984625 |
ttgttagtattgcatgaagaaattccaaaacgtgtaacac |
52984586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 55664526 - 55664435
Alignment:
| Q |
49 |
atactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtttcttctagtttgatgtttgggtat |
140 |
Q |
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| T |
55664526 |
atactcaaatgatgttaaatatcatgtttaatgaagtgcaatgtcgatttctttattgctcatgcttttcttcaagtttgatgtttgggtat |
55664435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 55636445 - 55636565
Alignment:
| Q |
17 |
atacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtt |
116 |
Q |
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||||||| || |||| ||||||||| ||||| | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| | |
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| T |
55636445 |
atacaggcaatctaataaatcccatcttttttaaactcaaatgatgttgaatatcacatttaataaaatgcaatgttaatttctttattgcttatgttgt |
55636544 |
T |
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| Q |
117 |
tcttctagtttgatgtttggg |
137 |
Q |
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||||| |||||||||||||| |
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| T |
55636545 |
tcttcatgtttgatgtttggg |
55636565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 54628201 - 54628288
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttcttta |
103 |
Q |
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| T |
54628201 |
gatacaggtaagcttataaatcccatctttttgatactcaaatgatgctaaatttcatgcttaataaagtacaatgttaatttcttta |
54628288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 55627287 - 55627168
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatc----atgtttaataaagtgcaatgttaatttctttattgcttat |
111 |
Q |
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|||||| ||||||||| ||||||||| ||||| |||||||||| |||||| ||||| |||| |||||| ||||||||||| ||||| |||||||||| |
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| T |
55627287 |
gatacaagtaagctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttat |
55627188 |
T |
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| Q |
112 |
gcgtttcttctagtttgatg |
131 |
Q |
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| T |
55627187 |
gcttttcttcaagtttgatg |
55627168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 55619983 - 55619864
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatc----atgtttaataaagtgcaatgttaatttctttattgcttat |
111 |
Q |
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|||||| ||||||||| ||||||||| ||||| |||||||||| |||||| ||||| |||| |||||| ||||||||||| ||||| |||||||||| |
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| T |
55619983 |
gatacaagtaagctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttat |
55619884 |
T |
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| Q |
112 |
gcgtttcttctagtttgatg |
131 |
Q |
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|| ||||||| |||| |||| |
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| T |
55619883 |
gcttttcttcaagttagatg |
55619864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 55658333 - 55658214
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatc----atgtttaataaagtgcaatgttaatttctttattgcttat |
111 |
Q |
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|||||| ||||||||| ||||||||| ||||| |||||||||| |||||| ||||| |||| |||||| ||||||||||| ||||| |||||||||| |
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| T |
55658333 |
gatacaagtaagctaataaatcccatcttttttatactcaaataatgttacatatcgatcatgtataataatgtgcaatgttagtttctgtattgcttat |
55658234 |
T |
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| Q |
112 |
gcgtttcttctagtttgatg |
131 |
Q |
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|| ||||||| |||| |||| |
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| T |
55658233 |
gcttttcttcaagttagatg |
55658214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 54861401 - 54861354
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgt |
63 |
Q |
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|||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
54861401 |
gatacaggtaagctaataaatcccattattttgatactcaaatgatgt |
54861354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 51316152 - 51316208
Alignment:
| Q |
16 |
gatacaggtaagctaacaaatcccatgtttttgatactcaaatgatgttaaatatca |
72 |
Q |
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||||||||||| | || || |||||| ||||| |||||||||||| ||||||||||| |
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| T |
51316152 |
gatacaggtaaacaaataattcccatcttttttatactcaaatgacgttaaatatca |
51316208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 13402837 - 13402939
Alignment:
| Q |
32 |
caaatcccatgtttttgata-ctcaaatgatgttaaatatcatgtttaataaagtgcaatgttaatttctttattgcttatgcgtttcttctagtttgat |
130 |
Q |
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|||||||||||||| | ||| ||||| |||||||||||||||||| |||| || |||||||||||| || |||||| |||||| ||| ||| | |||||| |
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| T |
13402837 |
caaatcccatgtttataataactcaattgatgttaaatatcatgtctaattaaatgcaatgttaatatc-ttattgtttatgcttttattcaattttgat |
13402935 |
T |
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| Q |
131 |
gttt |
134 |
Q |
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|||| |
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| T |
13402936 |
gttt |
13402939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 9890802 - 9890854
Alignment:
| Q |
79 |
ataaagtgcaatgttaatttctttattgcttatgcgtttcttctagtttgatg |
131 |
Q |
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|||| ||||||||||| |||||||||||||||||| ||||||| ||||||||| |
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| T |
9890802 |
ataaggtgcaatgttattttctttattgcttatgcttttcttcaagtttgatg |
9890854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 14276342 - 14276301
Alignment:
| Q |
204 |
ttagagttgttagtattgcatgaagaaattccaaaacgtgta |
245 |
Q |
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|||||||||||| ||||||| |||||||||||||| |||||| |
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| T |
14276342 |
ttagagttgttattattgcacgaagaaattccaaagcgtgta |
14276301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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