View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_31 (Length: 228)
Name: NF0714_high_31
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 1717161 - 1716941
Alignment:
| Q |
8 |
agttgtggtttcatttcatgatagctaatgctcgtatttattctgattattatgtgtaggagtgaagatatttgtgagcataacattcaatttttccgag |
107 |
Q |
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| T |
1717161 |
agttgtggtttcatttcatgatagctaatgctcgtatttattctgattattatgtgtaggagtgaagatatttgtgagcataacattcaatttttccgag |
1717062 |
T |
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| Q |
108 |
catcattgttaaacaaaatggtttctagcaatctttgtggctggccttggagaaatgtatgattccaattaagctactttagttttagagctgatattta |
207 |
Q |
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| T |
1717061 |
catcattgttaaacaaaatggtttctagcagtctttgtggctggccttggagaaatgtatgattccaattaagctactttagttttagagctgatattta |
1716962 |
T |
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| Q |
208 |
attccagaagtgatataacac |
228 |
Q |
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| T |
1716961 |
attccagaagtgatataacac |
1716941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 42221859 - 42221712
Alignment:
| Q |
21 |
tttcatgatagctaatgctcgtatttattctgattattatgtgtaggagtgaagatatttgtgagcataacattcaatttttccgagcatcattgttaaa |
120 |
Q |
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| T |
42221859 |
tttcatgatagctaatgctggtatttattctgattattatgtgtatgagtgaagatatttgtcagcataacattcaatttttccgagcatcattgttaaa |
42221760 |
T |
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| Q |
121 |
caaaatggtttctagcaatctttgtggctggccttggagaaatgtatg |
168 |
Q |
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| T |
42221759 |
caaaatggtttctagcagtatttgtggctgatcttggagaagtgtatg |
42221712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 42221514 - 42221456
Alignment:
| Q |
170 |
ttccaattaagctactttagttttagagctgatatttaattccagaagtgatataacac |
228 |
Q |
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| T |
42221514 |
ttccaattaagctactttagttttagagctgatatttaattccaaaagtgatattacac |
42221456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 42555729 - 42555682
Alignment:
| Q |
158 |
agaaatgtatgattccaattaagctactttagttttagagctgatatt |
205 |
Q |
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| T |
42555729 |
agaaaggtatgattccaattaagctattttattttgagagctgatatt |
42555682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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