View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_high_4 (Length: 435)

Name: NF0714_high_4
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_high_4
NF0714_high_4
[»] chr2 (2 HSPs)
chr2 (1-347)||(15347676-15348024)
chr2 (280-347)||(15347349-15347416)
[»] chr1 (3 HSPs)
chr1 (76-347)||(3893416-3893687)
chr1 (280-347)||(7001949-7002015)
chr1 (6-50)||(3893717-3893761)
[»] chr6 (1 HSPs)
chr6 (120-343)||(4295430-4295653)
[»] chr5 (3 HSPs)
chr5 (13-167)||(934222-934373)
chr5 (257-347)||(934387-934477)
chr5 (280-347)||(933910-933977)
[»] chr8 (2 HSPs)
chr8 (286-344)||(45438373-45438431)
chr8 (273-330)||(45438131-45438188)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 15347676 - 15348024
Alignment:
Q  1 agataaaaaatgagaaaatattttcccagattgcgaaaatttgggaacaacaaaaatttgataannnnnnnaaacaaaacaaaaattgataccttaaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||    
T  15347676 agataaaaaatgagaaaatattttcccagattgcgaaaatttgggaacaacaaaaatttgataattttttgaaacaaaacaaaaattgttaccttaaaag 15347775  T
Q  101 caacaaatgaatcaaaacggttgggtttcaaacagaggtgtcattcaagatgatgataggtgaaggagggaaataaaaaggcgttttgctttgg-ttttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  15347776 caacaaatgaatcaaaacggttgggtttcaaacagaggtgtcattcaagatgatgataggtgaaggagggaaacaaagaggcgttttgctttggtttttt 15347875  T
Q  200 tgtgtttgacattctactttactgcctttgctttggttctagaaatagttcgaattgtacctc-aaaaattagaattctaagtgttggattaaagatggt 298  Q
    |||||||||||||||||||| |||| |||| |||||||||||||||||||  |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  15347876 tgtgtttgacattctactttcctgcttttgatttggttctagaaatagtttaaattttacctcaaaaaattagaattctaagtgttggattaaagatggt 15347975  T
Q  299 ttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15347976 ttcttgaatgattttatgtatgttgagtttttgaatgattttgatgatg 15348024  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 15347416 - 15347349
Alignment:
Q  280 gtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    |||||||||||||||||  ||||| ||||||||||||||| || | ||||||||||||| ||||||||    
T  15347416 gtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattttgatgatg 15347349  T

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Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 76 - 347
Target Start/End: Complemental strand, 3893687 - 3893416
Alignment:
Q  76 aaaacaaaaattgataccttaaaagcaacaaatgaatcaaaacggttgggtttcaaacagaggtgtcattcaagatgatgataggtgaaggagggaaata 175  Q
    ||||||||||||||||||||||||| |||||| ||||  ||||  || |||||||| || |||||||||| |||||||||||||||||| ||| ||        
T  3893687 aaaacaaaaattgataccttaaaagaaacaaaggaatttaaacatttaggtttcaaccataggtgtcattgaagatgatgataggtgaatgagagagtcg 3893588  T
Q  176 aaaaggcgttttgctttggttttttgtgtttgacattctactttactgcctttgctttggttctagaaatagttcgaattgtacctcaaaaattagaatt 275  Q
    || ||  |||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||| || |||  ||| ||||||| ||||||| |||    
T  3893587 aagagttgttttgttttggttttttgtgtttgacattctactttgttgcttttgctttggttctagaagtaattcttattttacctcagaaattaggatt 3893488  T
Q  276 ctaagtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  3893487 ctaggtgttggattaaagatgatttcttgaatgattttatgtatgttgagtatttgaatgattttgatgatg 3893416  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 7002015 - 7001949
Alignment:
Q  280 gtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    |||||||||||| ||  |||||||||| ||||||||||||||| | ||||| ||||||| ||||||||    
T  7002015 gtgttggattaaggagtgtttcttgaaagattttatgtatgtt-atttttttaatgattttgatgatg 7001949  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 3893761 - 3893717
Alignment:
Q  6 aaaaatgagaaaatattttcccagattgcgaaaatttgggaacaa 50  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||||    
T  3893761 aaaaaggagaaaatattttcccggattgcaaaaatttgagaacaa 3893717  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 120 - 343
Target Start/End: Original strand, 4295430 - 4295653
Alignment:
Q  120 gttgggtttcaaacagaggtgtcattcaagatgatgataggtgaaggagggaaataaaaaggcgttttgctttggttttttgtgtttgacattctacttt 219  Q
    ||||||||||||||| ||||| || | |||||||||||| || || |||||| |  || ||  |||||||||| ||||||||||||||||||||||||||    
T  4295430 gttgggtttcaaacaaaggtgccactgaagatgatgataagtcaatgagggagacgaagagatgttttgctttagttttttgtgtttgacattctacttt 4295529  T
Q  220 actgcctttgctttggttctagaaatagttcgaattgtacctcaaaaattagaattctaagtgttggattaaagatggtttcttgaatgattttatgtat 319  Q
     |||| ||| |||||||||||| | || |||||||| ||| | | |||||   |||||| |||||||||||||||  | ||||  ||| |||||||||||    
T  4295530 gctgcttttactttggttctaggagtaattcgaattttacttaagaaattgcgattctaggtgttggattaaagagagcttctataatcattttatgtat 4295629  T
Q  320 gttgagtttttgaatgattatgat 343  Q
    ||||| ||||| ||||||| ||||    
T  4295630 gttgaattttttaatgattttgat 4295653  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 934222 - 934373
Alignment:
Q  13 agaaaatattttcccagattgcgaaaatttgggaacaacaaaaatttgataannnnnnnaaacaaaacaaaaattgataccttaaaagcaacaaatgaat 112  Q
    |||||||||||||| ||||||| ||||||||||| ||| ||||||| |||||       |||||||||||||||| |||||||||| |||||||| ||||    
T  934222 agaaaatattttccgagattgcaaaaatttggga-caaaaaaaatt-gataattttttaaaacaaaacaaaaattaataccttaaa-gcaacaaaggaat 934318  T
Q  113 caaaacggttgggtttcaaacagaggtgtcattcaagatgatgataggtgaagga 167  Q
    | ||||   ||||||||||||| || | ||||| |||||||||| ||||||||||    
T  934319 cgaaacatatgggtttcaaacaaagatatcattgaagatgatgacaggtgaagga 934373  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 934387 - 934477
Alignment:
Q  257 tacctcaaaaattagaattctaagtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    ||||||||||||||| ||  || |||||||||||||||||| ||||| |||||||| || |||||||| ||||||||||||| ||||||||    
T  934387 tacctcaaaaattaggatggtaggtgttggattaaagatggcttctttaatgatttaatttatgttgaatttttgaatgattttgatgatg 934477  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 933977 - 933910
Alignment:
Q  280 gtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatgatg 347  Q
    ||||| ||||||||| |||||| | |||||||||||||||||||| ||||  ||||||| ||||||||    
T  933977 gtgtttgattaaagagggtttcctaaatgattttatgtatgttgaattttataatgattttgatgatg 933910  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 344
Target Start/End: Original strand, 45438373 - 45438431
Alignment:
Q  286 gattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattatgatg 344  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||    
T  45438373 gattaaagagggtttcttgaatgattttatgtatgttgaattttttaatgattttgatg 45438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 45438188 - 45438131
Alignment:
Q  273 attctaagtgttggattaaagatggtttcttgaatgattttatgtatgttgagttttt 330  Q
    |||||| || |||||||||||| |||||||| |||| ||||||||||||||| |||||    
T  45438188 attctaggttttggattaaagagggtttctttaatggttttatgtatgttgaattttt 45438131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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