View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_high_6 (Length: 411)
Name: NF0714_high_6
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 171 - 393
Target Start/End: Original strand, 16486491 - 16486713
Alignment:
| Q |
171 |
cacccacagaaagaaaacacaaaacaaagccatcacctctaaatcaaactacaaaaccagatcaaaggtttataaccataaaccttccaaatgaaatttc |
270 |
Q |
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| T |
16486491 |
cacccacagaaagaaaacacaaaacaaagccatcacctctaaatcaaactacaaaaccagatcaaaggtttataaccataaaccttccaaatgaaatttc |
16486590 |
T |
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| Q |
271 |
tatattggaatataaggggatttgccaatgccccttcaagattggccctgaaaaatctcattgttaataacaaacctagttttgtctttatctctgaacc |
370 |
Q |
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| T |
16486591 |
tatattggaatataaggggatttgccaatgccccttcaagattggccctgaaaaatctcattgttaataacaaacctagttttgtctttatctctgaacc |
16486690 |
T |
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| Q |
371 |
tatgatggatattgatgatgtcc |
393 |
Q |
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||||||| |||| |||||||||| |
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| T |
16486691 |
tatgatgaatatagatgatgtcc |
16486713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 371
Target Start/End: Complemental strand, 24306780 - 24306659
Alignment:
| Q |
249 |
taaaccttccaaatgaaatttctatattggaatataaggggatttgccaatgccccttcaagattggccctgaaaaatctcattgttaataacaaaccta |
348 |
Q |
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| T |
24306780 |
taaacctttcaaatgaaggtcatagattggaatataaagggttttgccaatgccccttcatgattggccttgaaaaacctcatt-ataaaaacaaacctg |
24306682 |
T |
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| Q |
349 |
gttttgtctttatctctgaacct |
371 |
Q |
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| T |
24306681 |
attttatctttttatctgaacct |
24306659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 21004266 - 21004338
Alignment:
| Q |
271 |
tatattggaatataaggggatttgccaatgccccttcaagattggccctgaaaaatctcattgttaataacaa |
343 |
Q |
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|||| ||||||||||||||||||| ||||| ||| ||||||||||| || ||||| || ||| | |||||||| |
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| T |
21004266 |
tatactggaatataaggggatttgtcaatgtcccatcaagattggcactcaaaaacctaattctaaataacaa |
21004338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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