View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_high_7 (Length: 408)

Name: NF0714_high_7
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_high_7
NF0714_high_7
[»] chr3 (1 HSPs)
chr3 (30-408)||(32598107-32598485)
[»] chr5 (2 HSPs)
chr5 (89-162)||(20626816-20626888)
chr5 (72-156)||(14433505-14433589)
[»] chr4 (5 HSPs)
chr4 (60-132)||(42624941-42625013)
chr4 (51-162)||(24959855-24959966)
chr4 (116-160)||(21090454-21090498)
chr4 (110-161)||(41703238-41703289)
chr4 (113-154)||(40745306-40745347)
[»] chr2 (1 HSPs)
chr2 (58-122)||(24578108-24578172)
[»] chr8 (1 HSPs)
chr8 (51-130)||(29149372-29149452)
[»] chr1 (1 HSPs)
chr1 (58-162)||(17409987-17410092)
[»] scaffold0045 (1 HSPs)
scaffold0045 (104-162)||(25540-25598)
[»] chr7 (2 HSPs)
chr7 (51-132)||(43200432-43200513)
chr7 (51-123)||(39104066-39104138)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 408
Target Start/End: Complemental strand, 32598485 - 32598107
Alignment:
Q  30 cattaagcttcccaacaaaacaaaaatatttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgtt 129  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32598485 cattaagcttcccaacaaaacaaaaacatttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgcctcatatattaaaatttgtt 32598386  T
Q  130 ttagacctcttctacaaataaaatttattggacagttcctaaatctcagctttcgtgtcatcataggattcttattagaaagtcatggagagaataagga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |    
T  32598385 ttagacctcttctacaaataaaatttattggacagttcctaaatctcagctttcgtgtcattataggattcttattaggaagtcattgagagaataagaa 32598286  T
Q  230 acaacaatgaacttatgattcaaaaccaccaagagattgagatagtaccctttcacccaataccttaaaacatttgaaatatgagttacatctcttatat 329  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32598285 acaacaatgaacttatgattcaaaaccaccaagagattgagacagtaccctaccacccaataccttaaaacatttgaaatatgagttacatctcttatat 32598186  T
Q  330 atcttgcattcggtccattaataattgatgtgggttacatcttctttctattaccttgttttgtctcatgattttactt 408  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598185 atcttgtattcggtccattaataattgatgtgggttacatcttctttctattaccttgttttgtctcatgattttactt 32598107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 20626888 - 20626816
Alignment:
Q  89 tcatatatagactaaaaatgtctcatatattaaaatttgttttagacctcttctacaaataaaatttattggac 162  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||| | ||| |||||||||||||||||||||||    
T  20626888 tcatatacagactaaaaaagcctcatat-ttaaaatttgttttaaagctcgtctacaaataaaatttattggac 20626816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 14433589 - 14433505
Alignment:
Q  72 ttataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgttttagacctcttctacaaataaaattta 156  Q
    |||||||||||| ||  || |||| |||||||||||||||| ||||||||||| ||||||||  |||  ||||||||||||||||    
T  14433589 ttataaacaaaatggtctcgtatacagactaaaaatgtctcgtatattaaaatatgttttaggtctcacctacaaataaaattta 14433505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 42624941 - 42625013
Alignment:
Q  60 tttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgtttta 132  Q
    |||| |||||| |||||||||||||| | ||||||  |||||||||||||||||||||||||| |||| ||||    
T  42624941 tttcattagattttataaacaaaaagccatcatatgcagactaaaaatgtctcatatattaaattttgcttta 42625013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 162
Target Start/End: Complemental strand, 24959966 - 24959855
Alignment:
Q  51 aaaaatatttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgttttagacctcttctacaaataa 150  Q
    ||||||||||||| |||||| ||||||| ||||||   ||||||||  |||||||| |   | ||||||||||||||||||||| |||  ||| ||||||    
T  24959966 aaaaatatttttcattagattttataaataaaaagatctcatatatcaactaaaaaggctccgtatattaaaatttgttttagaactcacctaaaaataa 24959867  T
Q  151 aatttattggac 162  Q
    || |||||||||    
T  24959866 aagttattggac 24959855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 21090454 - 21090498
Alignment:
Q  116 tattaaaatttgttttagacctcttctacaaataaaatttattgg 160  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||    
T  21090454 tattaaaatttgatttagacctcatctacaaataaaaattattgg 21090498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 41703238 - 41703289
Alignment:
Q  110 ctcatatattaaaatttgttttagacctcttctacaaataaaatttattgga 161  Q
    |||||||||||||||||||||||| | ||  |||||||||||| ||||||||    
T  41703238 ctcatatattaaaatttgttttaggcatcacctacaaataaaacttattgga 41703289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 40745306 - 40745347
Alignment:
Q  113 atatattaaaatttgttttagacctcttctacaaataaaatt 154  Q
    ||||||||||| ||||||||||||||  ||||||||||||||    
T  40745306 atatattaaaacttgttttagacctcacctacaaataaaatt 40745347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 24578108 - 24578172
Alignment:
Q  58 tttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaa 122  Q
    |||||| |||||| |||||||||||||| ||||||||| | |||||||||| |||||||||||||    
T  24578108 tttttcattagattttataaacaaaaagacttcatatacaaactaaaaatgcctcatatattaaa 24578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 29149452 - 29149372
Alignment:
Q  51 aaaaatatttttccttagatatt-ataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgttt 130  Q
    ||||||||||||| |||||| || ||||| |||||||| ||||||| | | |||||| ||||||| |||||||||||||||    
T  29149452 aaaaatatttttcattagatttttataaataaaaaggcctcatatacaaattaaaaaggtctcatttattaaaatttgttt 29149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 17409987 - 17410092
Alignment:
Q  58 tttttccttagatattataaacaaaaaggct-tcatatatagactaaaaatgtctcatatattaaaatttgttttagacctcttctacaaataaaattta 156  Q
    |||||| |||||| |||||||||||||| |  |||||| | ||| |||||  || |||||||||||||||||| |||| |||  ||| |||||||| |||    
T  17409987 tttttcattagattttataaacaaaaagaccctcatatgtcgaccaaaaagatcccatatattaaaatttgttatagatctcacctaaaaataaaaatta 17410086  T
Q  157 ttggac 162  Q
    ||||||    
T  17410087 ttggac 17410092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 25598 - 25540
Alignment:
Q  104 aaatgtctcatatattaaaatttgttttagacctcttctacaaataaaatttattggac 162  Q
    |||||||||||||||||||||||||||| |||||  | ||| | ||||| |||||||||    
T  25598 aaatgtctcatatattaaaatttgttttggaccttatttactattaaaaattattggac 25540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 43200432 - 43200513
Alignment:
Q  51 aaaaatatttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaatttgtttta 132  Q
    |||| |||||||| ||| || |||||||||||||  | |||| ||  |||||||||  |||||||||||||||||| |||||    
T  43200432 aaaattatttttcattatattttataaacaaaaattcctcatttacggactaaaaaaatctcatatattaaaatttatttta 43200513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 39104138 - 39104066
Alignment:
Q  51 aaaaatatttttccttagatattataaacaaaaaggcttcatatatagactaaaaatgtctcatatattaaaa 123  Q
    ||||||||||||| ||| || ||||||||||||| || ||||||| |||| |||||   | ||||||||||||    
T  39104138 aaaaatatttttcattatattttataaacaaaaatgcctcatatacagacaaaaaagaccacatatattaaaa 39104066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1050 times since January 2019
Visitors: 4363