View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_1 (Length: 636)
Name: NF0714_low_1
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 2410842 - 2411125
Alignment:
| Q |
1 |
tcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagta |
100 |
Q |
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| T |
2410842 |
tcgtagaaatcgtcgtcaatttctatttcctcttcttcaattataggcaagaatcgattttctgacattattttgttaaga--------gcgttacagta |
2410933 |
T |
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| Q |
101 |
acacagtgttgtttttgttttggtgtttgtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggct |
200 |
Q |
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| T |
2410934 |
acacagtgttgtttttgttttggtgtt-gtaacaacaagtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggct |
2411032 |
T |
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| Q |
201 |
ggtagtaagagaataaaagaaacggtattcaagggttcttttcgtcatttcgaggttgaaattgggcttgaggttggtctcgacccgagaccaaatg |
297 |
Q |
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| T |
2411033 |
g---gtaagagaataaaagaaacggtattcaagggttcttttcgtcatttcga-gttcaaattgggcttgaggttggactcgacccgagaccaaatg |
2411125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 323 - 465
Target Start/End: Original strand, 2411123 - 2411261
Alignment:
| Q |
323 |
atgatttctttttacacttctcaatatctcttggaccccgaaattctgtttttatccataatatatacatacatagccgaagggtttgaaagttatcttc |
422 |
Q |
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| T |
2411123 |
atgatttctttttacacttctcaatatctcttggaccccgaaattctgtttttatctataatatatac----atagccgaagggtttgaaagttatcttc |
2411218 |
T |
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| Q |
423 |
ggaaaactgttttacccctaatgtatatgtatgatagatacat |
465 |
Q |
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| T |
2411219 |
ggaaaactgttttacccgtaatgtatatgtatgatagatacat |
2411261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 457 - 543
Target Start/End: Original strand, 2412488 - 2412574
Alignment:
| Q |
457 |
tagatacatcccaaaagtttcgggaattatctcccagagtggtgaaataattatcttccttttaggcacaaaatatagcggtgatcg |
543 |
Q |
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| T |
2412488 |
tagatacatcccaaaagtttcgggaattatcttctagagtggtgaaataattatcttccttttatgcacaaaatatagtggtgatcg |
2412574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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