View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_10 (Length: 466)

Name: NF0714_low_10
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_10
NF0714_low_10
[»] chr1 (5 HSPs)
chr1 (90-360)||(28909406-28909676)
chr1 (370-466)||(28909705-28909801)
chr1 (90-346)||(28921972-28922231)
chr1 (92-174)||(28914052-28914134)
chr1 (270-325)||(28914544-28914599)
[»] chr7 (2 HSPs)
chr7 (90-143)||(40288497-40288550)
chr7 (264-328)||(40288672-40288736)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 90 - 360
Target Start/End: Original strand, 28909406 - 28909676
Alignment:
Q  90 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909406 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 28909505  T
Q  190 tactctcctccatctataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacatggg 289  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28909506 tactctcctccatttataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacatggg 28909605  T
Q  290 atagaaactgctcaccgagctctttcttggcaggatcctagaaaaaatttacactaatagttaattttatt 360  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28909606 atagcaactactcaccgagctctttcttggcaggatcctagaaaaaatttacactaatagtcaattttatt 28909676  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 370 - 466
Target Start/End: Original strand, 28909705 - 28909801
Alignment:
Q  370 ggggcacaacatgatggtgaggttaaggtttctgatgtgtttctgcttccacaatggcatcacaattcacaatagaccttagtctcattagccttaa 466  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28909705 ggggcacaacatgatggtgaggttaaggtttctaatgtgtttctgattccacaatggcatcacaattcacaatagaccgtagtctcattagccttaa 28909801  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 90 - 346
Target Start/End: Original strand, 28921972 - 28922231
Alignment:
Q  90 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaaaaaggaga 189  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||||||||||| | |||||| ||| | |    
T  28921972 catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa 28922071  T
Q  190 ta---ctctcctccatctataagcataaacatcataccggattgatgcacggtatcctcttttaatgaattgaaaaagtctctggtgaatgtatcaacat 286  Q
    ||   || || ||||  ||||  | ||| |||| ||| |||||| ||||| |||||| |||||| ||||   || |  ||  ||||||| ||||||||||    
T  28922072 taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat 28922171  T
Q  287 gggatagaaactgctcaccgagctctttcttggcaggatcctagaaaaaatttacactaa 346  Q
    | ||||  ||||||||| | | ||||||||||||||||||||| |||||| ||| |||||    
T  28922172 gtgataacaactgctcagcaaactctttcttggcaggatcctacaaaaaaattatactaa 28922231  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 28914052 - 28914134
Alignment:
Q  92 tcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttata 174  Q
    ||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||||||| | ||| ||  |||||||||||    
T  28914052 tcatcaaatttaccaagagcattctccaagaaatcagaagcaggacctgattcaaaataaccattttaaaaatctattttata 28914134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 28914544 - 28914599
Alignment:
Q  270 ggtgaatgtatcaacatgggatagaaactgctcaccgagctctttcttggcaggat 325  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  28914544 ggtgaatgtatcaacatgggataacaactgctcaccgaactctttcttggcaggat 28914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 40288497 - 40288550
Alignment:
Q  90 catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgatt 143  Q
    ||||||||||||| |||||||||||||||||| | ||||  |||||||||||||    
T  40288497 catcatcaaatttaccaagagcattctccaagtaatcaaaggcaggacctgatt 40288550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 40288672 - 40288736
Alignment:
Q  264 gtctctggtgaatgtatcaacatgggatagaaactgctcaccgagctctttcttggcaggatcct 328  Q
    |||| ||||||||||||||||||| || |  ||||| ||||| | ||||||||| ||||||||||    
T  40288672 gtctttggtgaatgtatcaacatgagaaatcaactgatcaccaaactctttctttgcaggatcct 40288736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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