View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_14 (Length: 436)

Name: NF0714_low_14
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_14
NF0714_low_14
[»] chr2 (3 HSPs)
chr2 (119-348)||(15347349-15347580)
chr2 (1-64)||(15347635-15347700)
chr2 (281-348)||(15347957-15348024)
[»] chr5 (2 HSPs)
chr5 (184-348)||(933910-934072)
chr5 (278-348)||(934407-934477)
[»] chr1 (3 HSPs)
chr1 (181-348)||(7001949-7002113)
chr1 (278-348)||(3893416-3893486)
chr1 (1-64)||(3893742-3893805)
[»] chr8 (1 HSPs)
chr8 (232-345)||(45438318-45438431)
[»] chr4 (1 HSPs)
chr4 (272-348)||(9562274-9562350)
[»] chr7 (1 HSPs)
chr7 (271-336)||(21016716-21016781)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 119 - 348
Target Start/End: Complemental strand, 15347580 - 15347349
Alignment:
Q  119 ctcgaattgcatcctcacggaagcatgagcatttaaaaagtggagagtgtattggattttcatttcttcaaatttttattatcaatt--gagtatcatat 216  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  15347580 ctcgaattgcgtcctcgcggaagcatgagcatttaaaaagtggagagtgtatttgattttcatttcttcaaatttttattatcaattttgagtatcatat 15347481  T
Q  217 gtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttat 316  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15347480 gtttgaaggtgtaggtagaattagggggtttgatgctggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttat 15347381  T
Q  317 gtatatttactttttgaatgattatgatgatg 348  Q
    ||||||||||||||||||||||| ||||||||    
T  15347380 gtatatttactttttgaatgattttgatgatg 15347349  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15347700 - 15347635
Alignment:
Q  1 gaaaatattttctcattttttatcttcggggta--ttcaattcaaaataaaaatgaacattcatgt 64  Q
    |||||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||    
T  15347700 gaaaatattttctcattttttatcttgggggtattttcaattcgaaataaaaatgaacattcatgt 15347635  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 15347957 - 15348024
Alignment:
Q  281 gtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    |||||||||||||||||  ||||| ||||||||||||||| || | ||||||||||||| ||||||||    
T  15347957 gtgttggattaaagatggtttcttgaatgattttatgtatgttgagtttttgaatgattttgatgatg 15348024  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 184 - 348
Target Start/End: Complemental strand, 934072 - 933910
Alignment:
Q  184 cttcaaatttttattatcaatt--gagtatcatatgtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagttagg 281  Q
    |||||| |||||||||||||||  ||||||||||| ||||||| ||||||    |||||||| ||||||| ||||||||| |||||||||||||||||||    
T  934072 cttcaattttttattatcaattttgagtatcatatttttgaagctgtaga----attaggggttttgatgatggggtagtaaaaatggggtgaagttagg 933977  T
Q  282 tgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    |||| ||||||||| |  ||| ||||||||||||||||| || | ||||  ||||||| ||||||||    
T  933976 tgtttgattaaagagggtttcctaaatgattttatgtatgttgaattttataatgattttgatgatg 933910  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 934407 - 934477
Alignment:
Q  278 taggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    |||||||||||||||||||| |||||| |||||||| || ||| || | ||||||||||||| ||||||||    
T  934407 taggtgttggattaaagatggcttctttaatgatttaatttatgttgaatttttgaatgattttgatgatg 934477  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 181 - 348
Target Start/End: Complemental strand, 7002113 - 7001949
Alignment:
Q  181 tttcttcaaatttttattatcaatt--gagtatcatatgtttgaaggtgtagatagaattagggggtttgatggtggggtagttaaaatggggtgaagtt 278  Q
    |||| |||| |||||||||| ||||  ||||||||||| |||||||||    ||||||||| ||| ||||||||||||||||| |||||| |||||||||    
T  7002113 tttcatcaattttttattatgaattttgagtatcatatttttgaaggt----atagaattaagggttttgatggtggggtagtaaaaatgaggtgaagtt 7002018  T
Q  279 aggtgttggattaaaga-tgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    |||||||||||||| || ||| ||||| || ||||||||||||  ||| ||||| ||||||| ||||||||    
T  7002017 aggtgttggattaaggagtgt-ttcttgaaagattttatgtat-gttatttttttaatgattttgatgatg 7001949  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 3893486 - 3893416
Alignment:
Q  278 taggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    ||||||||||||||||||||  ||||| ||||||||||||||| || | | ||||||||||| ||||||||    
T  3893486 taggtgttggattaaagatgatttcttgaatgattttatgtatgttgagtatttgaatgattttgatgatg 3893416  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3893742 - 3893805
Alignment:
Q  1 gaaaatattttctcattttttatcttcggggtattcaattcaaaataaaaatgaacattcatgt 64  Q
    |||||||||||||| |||||   ||| ||| | |||||||||||||| ||||||||||||||||    
T  3893742 gaaaatattttctcctttttggccttggggttgttcaattcaaaatacaaatgaacattcatgt 3893805  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 45438318 - 45438431
Alignment:
Q  232 tagaattagggggtttgatggtggggtagttaaaatggggtgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttacttttt 331  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||| ||| ||||||||| |  ||||| ||||||||||||||| || | |||||    
T  45438318 tagaattaggggttttgatggtggggtaataaaaatggggtgaagttaggagtttgattaaagagggtttcttgaatgattttatgtatgttgaattttt 45438417  T
Q  332 gaatgattatgatg 345  Q
     ||||||| |||||    
T  45438418 taatgattttgatg 45438431  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 348
Target Start/End: Complemental strand, 9562350 - 9562274
Alignment:
Q  272 tgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatgattatgatgatg 348  Q
    |||||||||||||||||||||| | ||||| || ||| ||||||||||| |||||||||| ||||||| ||||||||    
T  9562350 tgaagttaggtgttggattaaaaaggtctttttgaattattttatgtatgtttactttttaaatgattttgatgatg 9562274  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 336
Target Start/End: Complemental strand, 21016781 - 21016716
Alignment:
Q  271 gtgaagttaggtgttggattaaagatgtcttcttaaatgattttatgtatatttactttttgaatg 336  Q
    |||||||||| ||||||||||||||  ||||||| ||||||||||||||| ||||  |||||||||    
T  21016781 gtgaagttagatgttggattaaagagatcttcttgaatgattttatgtatgtttaacttttgaatg 21016716  T

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