View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_2 (Length: 542)
Name: NF0714_low_2
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 36606120 - 36606574
Alignment:
| Q |
1 |
atatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcaaactcaacggcatcagatgtagttgtttgatttataagaaaactatcat |
100 |
Q |
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| T |
36606120 |
atatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcacactcaacgacatcagatgtagttgtttgatttataagaaaactatcat |
36606219 |
T |
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| Q |
101 |
acattactgagtgatccagagttaacctgggacttactttctcattacaagtaatggtattttgaaaagttggtgtaaacggagaggattcaccagaaat |
200 |
Q |
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| T |
36606220 |
acattactgagtgatccagagttaacctgggacttactttctcattacgagtaatggtattctgaaaagttggtgtaaactgagaggattcaccagaaat |
36606319 |
T |
|
| Q |
201 |
attttcatcaggaccatcactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaa |
300 |
Q |
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| T |
36606320 |
attttcatcaggaccaccactgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaa |
36606419 |
T |
|
| Q |
301 |
gtgtttgcgaagtcaaaaagttcaaatccttgaatggagactgaagatgaaacagaattgttgctggttgcttgcattcctttggtactactttcaaaag |
400 |
Q |
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| T |
36606420 |
gtgtttgcaaagtcaaaaagttcaaatccttgaatagagactgaagatgaaacaga---gttgctggttgcttgcattcctttggtactactttcaaaag |
36606516 |
T |
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| Q |
401 |
ccttcaaaggctctctagaaacatgtggcagatga---ttaggtaactgatgatgtcc |
455 |
Q |
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| T |
36606517 |
ccttcaaaggctctttagaaacatgtggcagatgaccgttaggcaaccgatgatgtcc |
36606574 |
T |
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