View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_20 (Length: 408)

Name: NF0714_low_20
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_20
NF0714_low_20
[»] chr5 (5 HSPs)
chr5 (241-408)||(733536-733703)
chr5 (64-181)||(733763-733880)
chr5 (91-181)||(8150880-8150971)
chr5 (64-169)||(1681344-1681449)
chr5 (264-325)||(36568074-36568135)
[»] chr8 (5 HSPs)
chr8 (64-181)||(29914333-29914450)
chr8 (125-177)||(32063881-32063933)
chr8 (247-325)||(1271476-1271554)
chr8 (264-305)||(4785600-4785641)
chr8 (264-324)||(24681750-24681811)
[»] chr4 (13 HSPs)
chr4 (64-169)||(54273774-54273879)
chr4 (246-293)||(41260450-41260497)
chr4 (242-325)||(48338680-48338764)
chr4 (242-324)||(46471763-46471846)
chr4 (246-308)||(5122060-5122122)
chr4 (243-301)||(41312358-41312416)
chr4 (278-320)||(54273590-54273632)
chr4 (242-314)||(18536333-18536406)
chr4 (264-305)||(20986759-20986800)
chr4 (373-405)||(18319156-18319188)
chr4 (373-405)||(18396801-18396833)
chr4 (278-334)||(31109788-31109844)
chr4 (264-316)||(41325755-41325807)
[»] chr3 (7 HSPs)
chr3 (64-181)||(21238265-21238382)
chr3 (70-181)||(51194457-51194567)
chr3 (246-322)||(17144397-17144473)
chr3 (246-293)||(20846816-20846863)
chr3 (366-405)||(52632595-52632634)
chr3 (247-325)||(38651691-38651769)
chr3 (265-325)||(22255959-22256019)
[»] chr6 (5 HSPs)
chr6 (64-181)||(28610846-28610963)
chr6 (256-325)||(9686400-9686469)
chr6 (257-320)||(22414161-22414225)
chr6 (242-325)||(32190345-32190429)
chr6 (264-308)||(12108258-12108302)
[»] chr1 (13 HSPs)
chr1 (256-325)||(6248425-6248494)
chr1 (256-305)||(26344730-26344779)
chr1 (244-293)||(35979968-35980017)
chr1 (246-306)||(39166881-39166941)
chr1 (242-316)||(36203120-36203195)
chr1 (107-176)||(21907163-21907232)
chr1 (244-293)||(35992291-35992340)
chr1 (256-305)||(40094848-40094897)
chr1 (256-325)||(50471450-50471519)
chr1 (264-305)||(52380416-52380457)
chr1 (242-325)||(23474764-23474848)
chr1 (369-405)||(25559597-25559633)
chr1 (338-391)||(39157903-39157958)
[»] chr7 (11 HSPs)
chr7 (242-325)||(524530-524614)
chr7 (246-305)||(47646443-47646502)
chr7 (256-325)||(1812831-1812900)
chr7 (242-297)||(43202751-43202807)
chr7 (278-405)||(20482859-20482988)
chr7 (346-405)||(31011340-31011401)
chr7 (264-305)||(6879779-6879820)
chr7 (251-320)||(11399468-11399537)
chr7 (64-181)||(43908901-43909017)
chr7 (246-293)||(27456668-27456716)
chr7 (369-405)||(34751457-34751493)
[»] scaffold0204 (1 HSPs)
scaffold0204 (242-325)||(26202-26286)
[»] chr2 (3 HSPs)
chr2 (242-301)||(34572634-34572693)
chr2 (256-305)||(5862339-5862389)
chr2 (109-177)||(15697954-15698022)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 241 - 408
Target Start/End: Complemental strand, 733703 - 733536
Alignment:
Q  241 ctacatttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatgtgtgctaggtttggt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  733703 ctacatttttaaatcaaaagcatagaagaaactttacaagagaaaaaacatgttattctattaaatttaccattgaatttttatgtgtgctaggtttggt 733604  T
Q  341 gacgaatgtttaattagcgttttccatgttgcggtttgatttggtttggttgctaaaataaaaacgaa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  733603 gacgaatgtttaattagcgttttccatgttgcggtttgatttggtttggttgctaaaataaaaacgaa 733536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 733880 - 733763
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  733880 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatc 733781  T
Q  164 gaatttgtatgattcaag 181  Q
    ||||||||||||||||||    
T  733780 gaatttgtatgattcaag 733763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 8150880 - 8150971
Alignment:
Q  91 tgaacaaaaaa-caattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcattgaatttgtatgattcaag 181  Q
    ||||||||||| ||||||||||   ||| |||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||| |||||||    
T  8150880 tgaacaaaaaagcaattatcttaaataagaaatgcaaaagactaaaattctatcattctttagaagttctcattgaatttctattattcaag 8150971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 1681344 - 1681449
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| || |||| ||||||| ||||| || |||||||||||| |||| | ||| |||| |||||  |||| ||| ||||||| | ||||||||  ||||    
T  1681344 catcaacagagacgaaattaaaaacatggaccaaaaaacaattctctttgataagaaatgcaaaactctaagattttatcattctctaaaagtttacatt 1681443  T
Q  164 gaattt 169  Q
    ||||||    
T  1681444 gaattt 1681449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 36568074 - 36568135
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    |||||| |||| |||||||||||||||||| ||| ||| ||| || ||||||| ||||||||    
T  36568074 agaagacacttaacaagagaaaaaatatgtcattgtatcaaagtttccattgagtttttatg 36568135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 29914450 - 29914333
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| |||| |||||||||| ||||| || ||||||||||||||||| ||||| |||| |||| |||||||||| ||||||| | |||||||||| |||    
T  29914450 catcaacatataccaaattaaaaacatggatcaaaaaacaattatctttggtaagaaatacaaatgactaaaattttatcattctctaaaagttcttatt 29914351  T
Q  164 gaatttgtatgattcaag 181  Q
    |  ||| |||||||||||    
T  29914350 gggtttctatgattcaag 29914333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 32063933 - 32063881
Alignment:
Q  125 aaaagactaaaattctatcattatttaaaagttctcattgaatttgtatgatt 177  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||| |||||||    
T  32063933 aaaagactaagattttatcattctttaaaagttctcattgaatttatatgatt 32063881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 1271476 - 1271554
Alignment:
Q  247 ttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    |||||||  ||||||| ||||||||||| |||||||||||||||| | ||| ||||||| || ||||||| ||| ||||    
T  1271476 ttttaaagtaaaagcaaagaagaaacttaacaagagaaaaaatatatcattttattaaagtttccattgagtttctatg 1271554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 4785600 - 4785641
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    |||||||||||||||||||||||||||| | ||| |||||||    
T  4785600 agaagaaactttacaagagaaaaaatatctcattttattaaa 4785641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 24681811 - 24681750
Alignment:
Q  264 agaagaaactttacaagagaaaaaa-tatgttattctattaaatttaccattgaatttttat 324  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||||| || ||||||| |||||||    
T  24681811 agaagaaacttaacaagagaaaaaaatatgtcattttattaaagtttccattgagtttttat 24681750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 54273879 - 54273774
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| ||||||||||||||| || || || |||||| ||||| |||||||||| |||| |||||| |||| ||| ||||||| | ||||||||||||||    
T  54273879 catcagcatagaccaaattaaaaatatggaccaaaaagcaattttcttcggtaagaaatgcaaaagcctaagattttatcattctctaaaagttctcatt 54273780  T
Q  164 gaattt 169  Q
    ||||||    
T  54273779 gaattt 54273774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 41260450 - 41260497
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgt 293  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||||||    
T  41260450 ttttgaaataaaaagcaaagaagaaactttacaagagaaaaaatatgt 41260497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 48338680 - 48338764
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||| ||| ||| ||| || ||||||| ||| ||||    
T  48338680 tacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatg 48338764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 46471763 - 46471846
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttat 324  Q
    ||||||||| |||| ||||| | |||| |||||| |||||||||||||||||| ||| ||| ||| || ||||||| |||||||    
T  46471763 tacatttttgaaataaaaagtaaagaaaaaacttaacaagagaaaaaatatgtcattttataaaaatttccattgagtttttat 46471846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 5122122 - 5122060
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaattt 308  Q
    ||||||||| ||||||| ||||  ||||| |||||||||||||||||| ||| ||| ||||||    
T  5122122 tttttaaataaaaagcaaagaaagaacttaacaagagaaaaaatatgtcattttataaaattt 5122060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 41312416 - 41312358
Alignment:
Q  243 acatttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctat 301  Q
    ||||||| |||| ||||||| |||||||| || |||| ||||||||||||| |||||||    
T  41312416 acattttgaaataaaaagcaaagaagaaatttaacaatagaaaaaatatgtcattctat 41312358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 54273632 - 54273590
Alignment:
Q  278 aagagaaaaaatatgttattctattaaatttaccattgaattt 320  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||    
T  54273632 aagagaaaaaatatgtcattctataaaatttatcattgaattt 54273590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 18536406 - 18536333
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccatt 314  Q
    ||||||||| |||| ||||||  ||||||||||| |||||||||||||||||| ||| ||| ||| || |||||    
T  18536406 tacatttttgaaataaaaagcgaagaagaaacttaacaagagaaaaaatatgtcattttataaaagtttccatt 18536333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 20986759 - 20986800
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  20986759 agaagaaacttaacaagagaaaaaatatgtcattttattaaa 20986800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 18319188 - 18319156
Alignment:
Q  373 ggtttgatttggtttggttgctaaaataaaaac 405  Q
    |||||||||||||||||||| ||||||||||||    
T  18319188 ggtttgatttggtttggttggtaaaataaaaac 18319156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 18396801 - 18396833
Alignment:
Q  373 ggtttgatttggtttggttgctaaaataaaaac 405  Q
    |||||||||||||||||||| ||||||||||||    
T  18396801 ggtttgatttggtttggttggtaaaataaaaac 18396833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 31109788 - 31109844
Alignment:
Q  278 aagagaaaaaatatgttattctattaaatttaccattgaatttttatgtgtgctagg 334  Q
    ||||||||||| |||| ||| ||| |||||| |||||||||||||||| || |||||    
T  31109788 aagagaaaaaacatgtcattttatgaaattttccattgaatttttatgagtactagg 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 41325755 - 41325807
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaatttaccattga 316  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||| || |||||||    
T  41325755 agaagaaacttaacaaaagaaaaaatatgtcattttattaaagtttccattga 41325807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 21238265 - 21238382
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| |||| |||||||||| ||||| || |||||||||||| |||| ||||| |||| |||| |||||||||| ||||||| | |||||||||| ||     
T  21238265 catcaacatataccaaattaaaaacatggatcaaaaaacaattctctttggtaagaaatgcaaatgactaaaattttatcattctctaaaagttcttata 21238364  T
Q  164 gaatttgtatgattcaag 181  Q
    | |||| |||||||||||    
T  21238365 ggatttctatgattcaag 21238382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 51194457 - 51194567
Alignment:
Q  70 catagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcattgaattt 169  Q
    ||||||||||||||| | ||| || |||||||||| ||| |||| ||| || | ||||| ||||| ||| ||||||| ||||||| |||||||||| |||    
T  51194457 catagaccaaattaaaagcatagaccaaaaaacaaatatattcgataagaattacaaaatactaagattttatcattttttaaaa-ttctcattgacttt 51194555  T
Q  170 gtatgattcaag 181  Q
     |||||||||||    
T  51194556 atatgattcaag 51194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 17144473 - 17144397
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaattttt 322  Q
    ||||||||| ||||||| |||| ||| || ||||| |||||||||||||||| ||| ||| || |||||||||||||    
T  17144473 tttttaaataaaaagcaaagaataaatttaacaagtgaaaaaatatgttattttataaaagtttccattgaattttt 17144397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 20846816 - 20846863
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgt 293  Q
    ||||||||| ||||  | ||||||||||||||||||||||||||||||    
T  20846816 tttttaaataaaaaataaagaagaaactttacaagagaaaaaatatgt 20846863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 52632595 - 52632634
Alignment:
Q  366 atgttgcggtttgatttggtttggttgctaaaataaaaac 405  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  52632595 atgttgcggtttggtttggtttggttggtaaaataaaaac 52632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 38651769 - 38651691
Alignment:
Q  247 ttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    |||||||| ||||||| ||||||||  | |||||||||||||||||| ||| ||| ||| || ||||||| ||| ||||    
T  38651769 ttttaaataaaaagcaaagaagaaatctaacaagagaaaaaatatgtaattttataaaagtttccattgagtttctatg 38651691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 22256019 - 22255959
Alignment:
Q  265 gaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    |||||||||| ||||||||||||||||   ||| ||||||| || ||||||||||| ||||    
T  22256019 gaagaaacttaacaagagaaaaaatataacattttattaaagtttccattgaatttatatg 22255959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 28610846 - 28610963
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| ||||||||||||||| || || || |||||||||||| |||||| ||| |||| |||||  |||| ||| ||||||| | |||| |||||||||    
T  28610846 catcaacatagaccaaattaaaaatatggaccaaaaaacaattctcttcgataagaaatacaaaatgctaagattttatcattctctaaaggttctcatt 28610945  T
Q  164 gaatttgtatgattcaag 181  Q
    || ||| ||| |||||||    
T  28610946 gagtttttataattcaag 28610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 9686400 - 9686469
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||| ||||||||||| |||||||||||||||| ||||| ||||||| ||  |||||||||| ||||    
T  9686400 aaaagcaaagaagaaacttaacaagagaaaaaatattttattttattaaagttttcattgaatttctatg 9686469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 22414161 - 22414225
Alignment:
Q  257 aaagcatagaagaaactttacaagag-aaaaaatatgttattctattaaatttaccattgaattt 320  Q
    |||||| ||||||||||| ||||||| ||||||||||| ||| ||||||| || |||||||||||    
T  22414161 aaagcaaagaagaaacttaacaagagaaaaaaatatgtcattttattaaagtttccattgaattt 22414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 32190429 - 32190345
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||||| |||| ||||| | ||||||||||| |||||||||||||||||| ||| ||| ||| || ||||||| ||| ||||    
T  32190429 tacatttttgaaataaaaagaaaagaagaaacttaacaagagaaaaaatatgtcattttataaaagtttccattgagtttctatg 32190345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 12108302 - 12108258
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaattt 308  Q
    ||||||||||| |||||||||||||||||| ||| ||| ||||||    
T  12108302 agaagaaacttaacaagagaaaaaatatgtcattttataaaattt 12108258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 6248425 - 6248494
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||| ||||||| || ||||||||||| ||||    
T  6248425 aaaagcaaagaagaaacttaacaagaggaaaaatatgtcattttattaaagtttccattgaatttctatg 6248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 26344779 - 26344730
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  26344779 aaaagcaaagaagaaacttaacaagagaaaaaatatgtcattttattaaa 26344730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 35980017 - 35979968
Alignment:
Q  244 catttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgt 293  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||||    
T  35980017 cattttgaaataaaaagcaaagaagaaacttaacaagagaaaaaatatgt 35979968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 39166941 - 39166881
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaat 306  Q
    |||| |||| |||| || ||||||||||| |||||||||||||||||| ||||||| ||||    
T  39166941 ttttaaaataaaaaccaaagaagaaacttaacaagagaaaaaatatgtcattctataaaat 39166881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 36203195 - 36203120
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattga 316  Q
    ||||||||| |||| ||||||| ||||||||||| ||||||||| |||||||| ||| ||| ||| || |||||||    
T  36203195 tacatttttgaaataaaaagcaaagaagaaacttaacaagagaacaaatatgtcattttataaaagtttccattga 36203120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 21907163 - 21907232
Alignment:
Q  107 atcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcattgaatttgtatgat 176  Q
    ||||| ||||| |||| ||||||||||||||| ||||||| ||||||| ||||  |||| ||| ||||||    
T  21907163 atctttggtaagaaatacaaaagactaaaattttatcattttttaaaaattcttgttgagtttctatgat 21907232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 35992340 - 35992291
Alignment:
Q  244 catttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgt 293  Q
    |||||| |||| ||||| | ||||||||||| ||||||||||||||||||    
T  35992340 cattttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgt 35992291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 40094897 - 40094848
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||| ||||||||||| |||||||||| ||||||| ||| |||||||    
T  40094897 aaaagcaaagaagaaacttaacaagagaaataatatgtcattttattaaa 40094848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 50471450 - 50471519
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||| ||||| ||||| || ||||||||||| ||| ||| ||||||| |||||||||| ||| ||||    
T  50471450 aaaagcaaagaaggaacttaactagagaaaaaatgtgtcattttattaaagttaccattgagtttctatg 50471519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 52380457 - 52380416
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  52380457 agaagaaacttaacaagagaaaaaatatgtcattttattaaa 52380416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 23474848 - 23474764
Alignment:
Q  242 tacatttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctat-taaatttaccattgaatttttatg 325  Q
    |||||||| |||| |||| || |||||||| || |||||||||||||||||| ||| |||  ||| || ||||||||||| ||||    
T  23474848 tacattttaaaataaaaatcaaagaagaaaattaacaagagaaaaaatatgtcattttataaaaagtttccattgaatttctatg 23474764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 25559633 - 25559597
Alignment:
Q  369 ttgcggtttgatttggtttggttgctaaaataaaaac 405  Q
    |||||||||||||||||||||||| |||||| |||||    
T  25559633 ttgcggtttgatttggtttggttggtaaaatcaaaac 25559597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 39157958 - 39157903
Alignment:
Q  338 ggtgacgaatgtttaattagcgttttcc--atgttgcggtttgatttggtttggtt 391  Q
    |||||| ||||||||||||| ||||  |  ||||||||||||||||||||||||||    
T  39157958 ggtgacaaatgtttaattagtgtttatcttatgttgcggtttgatttggtttggtt 39157903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 524614 - 524530
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||||||| ||| ||| || ||||||| ||| ||||    
T  524614 tacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgttattttataaaagtttccattgagtttctatg 524530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 305
Target Start/End: Complemental strand, 47646502 - 47646443
Alignment:
Q  246 tttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||||| ||||| | ||||||||||| |||||||||||||||||| ||| |||||||    
T  47646502 tttttaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgtcattttattaaa 47646443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 1812831 - 1812900
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||| ||||||||||  |||||||||||||||||| ||| ||||||| ||  |||||||||| ||||    
T  1812831 aaaagcaaagaagaaactcaacaagagaaaaaatatgtcattttattaaaattttcattgaatttctatg 1812900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 43202751 - 43202807
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttatt 297  Q
    ||||||||| |||| ||||| | ||||||||||| ||||||||||||||||||||||    
T  43202751 tacatttttgaaataaaaagtaaagaagaaacttaacaagagaaaaaatatgttatt 43202807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 405
Target Start/End: Complemental strand, 20482988 - 20482859
Alignment:
Q  278 aagagaaaaaatatgttattctattaaatttaccattgaatttttatgtgtgctaggtttggtgacgaatgtttaattagcgttttcc--atgttgcggt 375  Q
    ||||||| ||| |||  ||||||| |||||| ||||||||||  |||| || |||||||  ||||   | |||||||||| ||||  |  || |||||||    
T  20482988 aagagaagaaacatgccattctataaaattttccattgaattcctatgagtactaggttgagtgatataagtttaattagtgtttctcttatattgcggt 20482889  T
Q  376 ttgatttggtttggttgctaaaataaaaac 405  Q
    |||||| |||| ||||||||||||||||||    
T  20482888 ttgattcggttgggttgctaaaataaaaac 20482859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 31011401 - 31011340
Alignment:
Q  346 atgtttaattagcgttttcc--atgttgcggtttgatttggtttggttgctaaaataaaaac 405  Q
    |||||||||||| ||||| |  ||||||||||||| ||| ||||||||| ||||||||||||    
T  31011401 atgtttaattagtgtttttcttatgttgcggtttggtttcgtttggttggtaaaataaaaac 31011340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 6879820 - 6879779
Alignment:
Q  264 agaagaaactttacaagagaaaaaatatgttattctattaaa 305  Q
    ||||||||||| |||||||||||||||||| ||| |||||||    
T  6879820 agaagaaacttaacaagagaaaaaatatgtcattttattaaa 6879779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 11399468 - 11399537
Alignment:
Q  251 aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaattt 320  Q
    |||| |||||||  |||||||||| |||||||| ||||||||| ||| ||| ||| || |||||||||||    
T  11399468 aaataaaaagcaacgaagaaacttaacaagagacaaaatatgtcattttataaaagtttccattgaattt 11399537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 43908901 - 43909017
Alignment:
Q  64 catcatcatagaccaaattaataacattgaacaaaaaacaattatcttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcatt 163  Q
    ||||| |||| | |||||||| ||||| || |||||||  ||| | |||||||| | || ||||||||||||||| || ||||||||||| | |||| |     
T  43908901 catcaacatatatcaaattaaaaacat-gagcaaaaaaacattttattcggtaagacatgcaaaagactaaaattttaccattatttaaatgctctcgtc 43908999  T
Q  164 gaatttgtatgattcaag 181  Q
    || ||| |||||||||||    
T  43909000 gagtttttatgattcaag 43909017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 27456668 - 27456716
Alignment:
Q  246 tttttaaatcaaaagcata-gaagaaactttacaagagaaaaaatatgt 293  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||||||||    
T  27456668 tttttaaataaaaagcaaaagaagaaacttaacaagagaaaaaatatgt 27456716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 34751457 - 34751493
Alignment:
Q  369 ttgcggtttgatttggtttggttgctaaaataaaaac 405  Q
    |||||||||||||||||||||||| |||||| |||||    
T  34751457 ttgcggtttgatttggtttggttggtaaaatcaaaac 34751493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 26202 - 26286
Alignment:
Q  242 tacattttt-aaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctattaaatttaccattgaatttttatg 325  Q
    ||||||||| |||| ||||||| ||||||||||| |||| ||||||||||||| ||| ||| ||| || ||||||| ||| ||||    
T  26202 tacatttttgaaataaaaagcaaagaagaaacttaacaatagaaaaaatatgtcattttataaaagtttccattgagtttctatg 26286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 34572693 - 34572634
Alignment:
Q  242 tacatttttaaatcaaaagcatagaagaaactttacaagagaaaaaatatgttattctat 301  Q
    ||||||||| ||  |||| || ||||||||||| |||||||||||||||||| |||||||    
T  34572693 tacatttttgaaataaaaacaaagaagaaacttaacaagagaaaaaatatgtcattctat 34572634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 5862389 - 5862339
Alignment:
Q  256 aaaagcatagaagaaactttacaagagaa-aaaatatgttattctattaaa 305  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||| |||||||    
T  5862389 aaaagcaaagaagaaactttacaagagaaaaaaatatgtcattttattaaa 5862339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 15698022 - 15697954
Alignment:
Q  109 cttcggtaacaaatccaaaagactaaaattctatcattatttaaaagttctcattgaatttgtatgatt 177  Q
    ||||| ||| |||||||||||| ||| ||| ||||||| | |||||||| ||||||| ||| |||||||    
T  15698022 cttcgataagaaatccaaaagattaatattttatcattctataaaagttgtcattgagtttctatgatt 15697954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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