View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_23 (Length: 380)
Name: NF0714_low_23
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 6871656 - 6871317
Alignment:
| Q |
20 |
atcaagagcttgcatgcatatggtactttcacgttagaaatctgttttccattcttacaagatgaataagtaccagctttcaacttatggttgtaatatc |
119 |
Q |
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| T |
6871656 |
atcaagagcttgcatgcatatggtactttcacgttagaaatctgctttccattcttacaagatgaacaagtaccagctttcaacttatggttgtaatatc |
6871557 |
T |
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| Q |
120 |
ctaacaacccacacgctccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaat |
219 |
Q |
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| T |
6871556 |
ctaacaacccacacgctccacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaat |
6871457 |
T |
|
| Q |
220 |
taaatgaattttcaattgtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttca |
319 |
Q |
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| T |
6871456 |
taaatgaattttcaattgtaatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttca |
6871357 |
T |
|
| Q |
320 |
ctgctgcacatttaattaacggcatgccaaatttatttta |
359 |
Q |
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| T |
6871356 |
ctactgcacatttaattaacggcatgccaaatttatttta |
6871317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 8488183 - 8487971
Alignment:
| Q |
23 |
aagagcttgcatgcatatggtactttcacgttagaaatctgttttccattcttacaagatgaataagtaccagctttcaacttatggttgtaatatccta |
122 |
Q |
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| T |
8488183 |
aagagtttgcatgcatatggtagcttcatggtggaaatctgctttccattcttacaagatgaacaaacaccagctttcaacttatggttgtaatatccca |
8488084 |
T |
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| Q |
123 |
acaacccacacgctccacagacctgtgta----aaaagggaaaactaacatcagccactataaaattta--cgaagttttttcattattcacaaaaccaa |
216 |
Q |
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|||| ||||| |||| |||||||||| || |||| || |||||| ||||||| ||| ||||||| | | ||| |||||| | ||||||||||||| |
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| T |
8488083 |
acaatccacaagctctacagacctgtataatataaaaagggaaactatcatcagcaactgtaaaattaaagcacagtcttttcactgttcacaaaaccaa |
8487984 |
T |
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| Q |
217 |
aattaaatgaatt |
229 |
Q |
| |
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| |||||||||| |
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| T |
8487983 |
taataaatgaatt |
8487971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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