View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_24 (Length: 372)
Name: NF0714_low_24
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 6074266 - 6074456
Alignment:
| Q |
26 |
gacactgacacatgaacaccggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagag |
125 |
Q |
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| T |
6074266 |
gacactgacacatgaacaccggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagag |
6074365 |
T |
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| Q |
126 |
ttgttagtgctatggagggtgtaacaaattaggtttttgtttacttgatcttcctactactgatagtgcatatgtgcatagaacatttttg |
216 |
Q |
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| T |
6074366 |
ttgttagtgctatggagggtgtaacaaattaggtttttgtttacttgatcttcctactactggtagtgcatatgtgcatagaacatttttg |
6074456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 46 - 352
Target Start/End: Original strand, 6074519 - 6074837
Alignment:
| Q |
46 |
ggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagagttgttagtgctatggagggt |
145 |
Q |
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| T |
6074519 |
ggtgataatttgagaaaatgaattagttgaacgtaatcacatgtgttggtgttagacacttgacacacctttgattagaggtgtcggtactacggaaggt |
6074618 |
T |
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| Q |
146 |
gtaacaaattaggttt------------ttgtttacttgatcttcctactactgatagtgcatatgtgcatagaacatttttggcattgaaatctgaccc |
233 |
Q |
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| T |
6074619 |
gtaacgaatcaggtttttgtttttgtttttgtttacaggatcttcctactactggtaatgcatatgtgcatagaacatttttggcattgaaatctgaccc |
6074718 |
T |
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| Q |
234 |
acttaggacaagagtggatttgatacatcaacaagctaaagatcatatttcattagtgaatgcttatgctgcatatgctaggaagcttaagcttgatatt |
333 |
Q |
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| T |
6074719 |
acttaggacaagagtggatttgatacatcaacaagctaaagatcatatttcattagtgaatgcttatgctgcatatgctaggaagcttaagcttgatatt |
6074818 |
T |
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| Q |
334 |
tctaggcagttgatgatgt |
352 |
Q |
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| T |
6074819 |
tctaggcagttgaagatgt |
6074837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 4793879 - 4793926
Alignment:
| Q |
60 |
aaaataaattatataaacataatcacatgtgttggtatcggacacctg |
107 |
Q |
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| T |
4793879 |
aaaattaattaattaaacataatcacatgtgttagtatcggacacctg |
4793926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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