View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_33 (Length: 339)
Name: NF0714_low_33
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 27234162 - 27233870
Alignment:
| Q |
25 |
catcaccataacctttccaaaaccgaaaaaagagtgtcaacccattatttcgaagnnnnnnnnntgttaccattccaa-cagcagaaccataccaggaat |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
27234162 |
catcaccataacctttccaaaaccgaaaaaagagtgtcaacccattatttcgaagaaaaaaaaatgttaccattccaaacagcagaaccataccaggaat |
27234063 |
T |
|
| Q |
124 |
cattcactcaccatcattcacttctcagagattaattacatcatcactcaaaagcaaacatcatcactcttctacaagatctccaccatgtatgcaagat |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27234062 |
cattcactcaccatcattcacttctctgagattaattacatcatcactcaaaagcaaacatcatcactcttctacaagatctccaccatgtatgcaagat |
27233963 |
T |
|
| Q |
224 |
taagggaccgaaattattatgaaagtcaaacatcatcaatcactctcccgcaaaatccagcatcaaaattcataaactcaaaaataatgatga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27233962 |
taagggaccgaaattattatgaaagtcaaacatcatcaatcactcttctgcaaaatcaagcatcaaaattcataaactcaaaaataatgatga |
27233870 |
T |
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