View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_36 (Length: 333)

Name: NF0714_low_36
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_36
NF0714_low_36
[»] scaffold0218 (1 HSPs)
scaffold0218 (58-107)||(14443-14492)
[»] scaffold0091 (3 HSPs)
scaffold0091 (58-107)||(29123-29172)
scaffold0091 (262-314)||(24720-24772)
scaffold0091 (262-314)||(28917-28969)
[»] chr8 (5 HSPs)
chr8 (58-107)||(23657835-23657884)
chr8 (58-107)||(23658600-23658649)
chr8 (263-314)||(23657648-23657699)
chr8 (263-314)||(23658423-23658474)
chr8 (68-103)||(29293929-29293964)
[»] chr6 (3 HSPs)
chr6 (58-107)||(14980263-14980312)
chr6 (58-107)||(14989375-14989424)
chr6 (262-314)||(14980470-14980522)
[»] chr3 (9 HSPs)
chr3 (58-107)||(4712800-4712849)
chr3 (58-107)||(16642363-16642412)
chr3 (58-107)||(14062778-14062827)
chr3 (262-314)||(16642133-16642185)
chr3 (58-107)||(14055037-14055086)
chr3 (262-314)||(4713007-4713059)
chr3 (272-314)||(14055242-14055284)
chr3 (269-314)||(14063000-14063045)
chr3 (68-101)||(13926858-13926891)
[»] chr1 (4 HSPs)
chr1 (58-107)||(51658662-51658711)
chr1 (65-107)||(13882243-13882285)
chr1 (269-314)||(13882481-13882526)
chr1 (269-311)||(51658870-51658912)
[»] scaffold1269 (1 HSPs)
scaffold1269 (58-107)||(44-93)
[»] chr7 (7 HSPs)
chr7 (58-107)||(48376853-48376902)
chr7 (262-314)||(16060374-16060426)
chr7 (58-107)||(16060578-16060627)
chr7 (68-101)||(4531759-4531792)
chr7 (269-314)||(9080206-9080251)
chr7 (269-314)||(16069022-16069067)
chr7 (262-314)||(48376637-48376689)
[»] scaffold0319 (1 HSPs)
scaffold0319 (58-107)||(13570-13619)
[»] scaffold0003 (2 HSPs)
scaffold0003 (262-314)||(130633-130685)
scaffold0003 (59-93)||(130862-130896)
[»] scaffold0063 (1 HSPs)
scaffold0063 (262-314)||(28466-28518)
[»] chr2 (1 HSPs)
chr2 (68-103)||(23656470-23656505)
[»] scaffold0061 (1 HSPs)
scaffold0061 (262-309)||(18109-18156)
[»] scaffold1043 (1 HSPs)
scaffold1043 (269-314)||(1439-1484)
[»] chr5 (2 HSPs)
chr5 (269-314)||(25756795-25756840)
chr5 (269-314)||(25790961-25791006)


Alignment Details
Target: scaffold0218 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 14492 - 14443
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 14443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 29172 - 29123
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 29123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 24772 - 24720
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  24772 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 28969 - 28917
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  28969 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 23657884 - 23657835
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 23657835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 23658649 - 23658600
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 23658600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  263 gactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  263 gactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  68 atgaggaatccataatgtgacgaagagtgatgacga 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 14980263 - 14980312
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 14980312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 14989375 - 14989424
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagat 14989424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 14980470 - 14980522
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  14980470 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 4712800 - 4712849
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 4712849  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 16642412 - 16642363
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 16642363  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 14062778 - 14062827
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagat 14062827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 16642185 - 16642133
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  16642185 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 14055037 - 14055086
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||| || |||||| ||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagat 14055086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 4713007 - 4713059
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||| ||||    
T  4713007 tgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 14055242 - 14055284
Alignment:
Q  272 aatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  14055242 aatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 14063000 - 14063045
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||    
T  14063000 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 13926858 - 13926891
Alignment:
Q  68 atgaggaatccataatgtgacgaagagtgatgac 101  Q
    |||||||||||||||||||| |||||||||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgac 13926891  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 51658662 - 51658711
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 51658711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 13882243 - 13882285
Alignment:
Q  65 ataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagat 13882285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 13882481 - 13882526
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  13882481 gagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 51658870 - 51658912
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgat 311  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||    
T  51658870 gagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 93 - 44
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagat 44  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 48376902 - 48376853
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagat 48376853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 16060426 - 16060374
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  16060426 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 16060627 - 16060578
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagat 16060578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 4531759 - 4531792
Alignment:
Q  68 atgaggaatccataatgtgacgaagagtgatgac 101  Q
    ||||||||||||||||||||||||||||||||||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgac 4531792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 9080251 - 9080206
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||    
T  9080251 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 16069022 - 16069067
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  16069022 gagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 13570 - 13619
Alignment:
Q  58 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagat 107  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagat 13619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 130685 - 130633
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  130685 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 130896 - 130862
Alignment:
Q  59 agatgaataatgaggaatccataatgtgacgaaga 93  Q
    ||||||||| |||||||||||||||||||||||||    
T  130896 agatgaatagtgaggaatccataatgtgacgaaga 130862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 28466 - 28518
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  28466 tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 23656470 - 23656505
Alignment:
Q  68 atgaggaatccataatgtgacgaagagtgatgacga 103  Q
    ||||||||||||||||||||||||||||||||||||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacga 23656505  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 18109 - 18156
Alignment:
Q  262 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatg 309  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||||||||    
T  18109 tgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

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Target: scaffold1043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 1439 - 1484
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||    
T  1439 gagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 25756795 - 25756840
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  25756795 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 25791006 - 25790961
Alignment:
Q  269 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 314  Q
    |||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  25791006 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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