View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_38 (Length: 325)

Name: NF0714_low_38
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_38
NF0714_low_38
[»] chr4 (13 HSPs)
chr4 (1-232)||(3932941-3933172)
chr4 (1-232)||(3817516-3817747)
chr4 (1-232)||(3919717-3919948)
chr4 (5-100)||(3987059-3987154)
chr4 (2-108)||(3810072-3810178)
chr4 (1-72)||(3801678-3801749)
chr4 (3-84)||(4010076-4010157)
chr4 (2-91)||(4025299-4025388)
chr4 (1-72)||(4218735-4218806)
chr4 (2-91)||(4002372-4002461)
chr4 (181-231)||(3954560-3954610)
chr4 (170-231)||(3986916-3986977)
chr4 (176-228)||(3809940-3809992)
[»] chr5 (1 HSPs)
chr5 (2-91)||(13398023-13398112)
[»] scaffold1360 (1 HSPs)
scaffold1360 (1-32)||(1936-1967)
[»] chr8 (3 HSPs)
chr8 (198-232)||(7023411-7023445)
chr8 (198-232)||(7075419-7075453)
chr8 (198-231)||(7036509-7036542)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3932941 - 3933172
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932941 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3933040  T
Q  101 acacatggtgggattggatctttaaaggaaagccttttatctgaactattgaaagaatctgtgaaagaattgtccagtggtattgagagatggatcggcc 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3933041 gcacatggtgggattggatctttaaaggaaagccttttatctgaactattgaaagaatctgttaaagaattgtccagtggtattgagagacggatcggcc 3933140  T
Q  201 gcatgaaagttcttattgttcttgatgatgtc 232  Q
    ||||||||||||||||||||||||||||||||    
T  3933141 gcatgaaagttcttattgttcttgatgatgtc 3933172  T

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Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 3817747 - 3817516
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817747 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3817648  T
Q  101 acacatggtgggattggatctttaaaggaaagccttttatctgaactattgaaagaatctgtgaaagaattgtccagtggtattgagagatggatcggcc 200  Q
    |||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||  ||||| ||||  |||    
T  3817647 acacatggtggagttggatgtttaaaggaaagccttttatctgaactattgaaagagtctgtgaaagaattgtccggtgatataaagagacggattagcc 3817548  T
Q  201 gcatgaaagttcttattgttcttgatgatgtc 232  Q
    ||||||| |||||||| |||||||||||||||    
T  3817547 gcatgaaggttcttatcgttcttgatgatgtc 3817516  T

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Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3919717 - 3919948
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3919717 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 3919816  T
Q  101 acacatggtgggattggatctttaaaggaaagccttttatctgaactattgaaagaatctgtgaaagaattgtccagtggtattgagagatggatcggcc 200  Q
     ||||||||||  |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||  ||||| ||||  |||    
T  3919817 gcacatggtggagttggatgtttaaaggaaagccttttatctgaactattgaaagagtctgtgaaagaattgtccggtgatataaagagacggattagcc 3919916  T
Q  201 gcatgaaagttcttattgttcttgatgatgtc 232  Q
    ||||||| |||||||| |||||||||||||||    
T  3919917 gcatgaaggttcttatcgttcttgatgatgtc 3919948  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 3987154 - 3987059
Alignment:
Q  5 attggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaa 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| || || ||||||||||||||||| |||| |||||| ||||||| |||||||    
T  3987154 attggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgttgttttttggcaaaggtgagtgaaaagttaaaa 3987059  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 3810178 - 3810072
Alignment:
Q  2 ggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaaaggttaaaaa 101  Q
    |||||||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||||||||||||||||||| ||||||  ||||| ||    
T  3810178 ggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtgaagagttaacaa 3810079  T
Q  102 cacatgg 108  Q
     ||||||    
T  3810078 gacatgg 3810072  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3801749 - 3801678
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgttt 72  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |  || |||||||||||||||||    
T  3801749 cggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttt 3801678  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 4010157 - 4010076
Alignment:
Q  3 gtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt 84  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| | || || ||||| ||||||||||| |||||||||||    
T  4010157 gtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgttgttttttggaaaaggt 4010076  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4025388 - 4025299
Alignment:
Q  2 ggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    ||||||||||||||||||||||| |||||||| ||||  |||||| | || || ||||| ||||||||||| |||| |||||| ||||||    
T  4025388 ggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaaaggtaagtgaa 4025299  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4218806 - 4218735
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgttt 72  Q
    ||||||||||||||||||||||||| ||||| |||||  ||||| | |||| || |||||||||||||||||    
T  4218806 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttt 4218735  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 4002461 - 4002372
Alignment:
Q  2 ggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    ||||||||||||||||||||||| |||||| | |||| || || | | || || ||||| |||| |||||| ||||||||||| ||||||    
T  4002461 ggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgttttttggaaaaggtaagtgaa 4002372  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 3954560 - 3954610
Alignment:
Q  181 tattgagagatggatcggccgcatgaaagttcttattgttcttgatgatgt 231  Q
    |||| ||||| |||| ||||| ||||| |||||||||||||||||||||||    
T  3954560 tattcagagaaggattggccgtatgaaggttcttattgttcttgatgatgt 3954610  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 3986977 - 3986916
Alignment:
Q  170 ttgtccagtggtattgagagatggatcggccgcatgaaagttcttattgttcttgatgatgt 231  Q
    |||||||||| |||||||||| | || || |||||||| ||||||||  |||||||||||||    
T  3986977 ttgtccagtgatattgagagacgaattggacgcatgaaggttcttatcattcttgatgatgt 3986916  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 3809992 - 3809940
Alignment:
Q  176 agtggtattgagagatggatcggccgcatgaaagttcttattgttcttgatga 228  Q
    |||| |||||||||  |||| ||||||||||| |||||||| |||||||||||    
T  3809992 agtgatattgagaggcggattggccgcatgaaggttcttatcgttcttgatga 3809940  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 13398112 - 13398023
Alignment:
Q  2 ggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggtcagtgaa 91  Q
    |||||||| |||||||||||||| |||||||| ||||  |||| | |||| || ||||| || |||||||| |||| |||||| ||||||    
T  13398112 ggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaaaggtgagtgaa 13398023  T

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Target: scaffold1360 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1936 - 1967
Alignment:
Q  1 cggtattggcaagacaactattgcagaagaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  1936 cggtattggcaagacaactattgcagaagaaa 1967  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 7023411 - 7023445
Alignment:
Q  198 gccgcatgaaagttcttattgttcttgatgatgtc 232  Q
    |||||||||| ||||||||||||||||||||||||    
T  7023411 gccgcatgaaggttcttattgttcttgatgatgtc 7023445  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 7075453 - 7075419
Alignment:
Q  198 gccgcatgaaagttcttattgttcttgatgatgtc 232  Q
    |||||||||| ||||||||||||||||||||||||    
T  7075453 gccgcatgaaggttcttattgttcttgatgatgtc 7075419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 7036509 - 7036542
Alignment:
Q  198 gccgcatgaaagttcttattgttcttgatgatgt 231  Q
    |||||||||| |||||||||||||||||||||||    
T  7036509 gccgcatgaaggttcttattgttcttgatgatgt 7036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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