View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_40 (Length: 319)
Name: NF0714_low_40
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5173792 - 5173560
Alignment:
| Q |
1 |
cgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173792 |
cgatttacaacgataaataattatgtgcataggcttttgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttata |
5173693 |
T |
|
| Q |
101 |
aatgatctacaattgaagttcaaaaggttcgtcatcc-aaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5173692 |
aatgatctacaattgaagttcaaaaggttcgtcatccaaaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataa |
5173593 |
T |
|
| Q |
200 |
cccggaatttgcaaacatggtagcacaagcaac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
5173592 |
cccggaatttgcaaacatggtagcacaagcaac |
5173560 |
T |
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