View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_41 (Length: 319)
Name: NF0714_low_41
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5173768 - 5174000
Alignment:
| Q |
1 |
cataattatttatcgttgtaaatcggatatccttcacgtgcaactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccat |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173768 |
cataattatttatcgttgtaaatcggatatccttcacgtgcaactatatagactaatccctcgagttaaatagagtcacgagggtgatacaactctccat |
5173867 |
T |
|
| Q |
101 |
taagagttttaacgctgctgcattctcagagctggattggaacctaggacctatgttatgttgtaagagacccgagtcatttcattcaagtgtttttgga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173868 |
taagagttttaacgctgctgcattctcagagctggattgaaacctaggacctatgttatgttgtaagagacccgagtcatttcattcaagtgtttttgga |
5173967 |
T |
|
| Q |
201 |
gtgtatgcacataatttatttttgtgagtatat |
233 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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| T |
5173968 |
gtgtatgcacataatttaattttgtgagtatat |
5174000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 56447184 - 56447233
Alignment:
| Q |
101 |
taagagttttaacgctgctgcattctcagagctggattggaacctaggac |
150 |
Q |
| |
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||||||||||||| ||||||||| | || ||||||||| ||||||||||| |
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| T |
56447184 |
taagagttttaacactgctgcatgcccatagctggattcgaacctaggac |
56447233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 25224779 - 25224727
Alignment:
| Q |
100 |
ttaagagttttaacgctgctgcattctcagagctggattggaacctaggacct |
152 |
Q |
| |
|
|||||||||||||||||||||||||| || | || |||| ||||| ||||||| |
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|
| T |
25224779 |
ttaagagttttaacgctgctgcattcccaaaacttgattcgaacccaggacct |
25224727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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