View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_43 (Length: 315)

Name: NF0714_low_43
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_43
NF0714_low_43
[»] chr3 (3 HSPs)
chr3 (76-205)||(49349676-49349806)
chr3 (76-143)||(52924414-52924481)
chr3 (75-143)||(3584004-3584072)
[»] chr7 (5 HSPs)
chr7 (75-153)||(36611465-36611543)
chr7 (76-143)||(44120358-44120425)
chr7 (9-75)||(40485160-40485226)
chr7 (76-143)||(8755098-8755165)
chr7 (76-126)||(28007157-28007207)
[»] chr5 (4 HSPs)
chr5 (76-153)||(24565573-24565650)
chr5 (76-153)||(24606609-24606686)
chr5 (73-130)||(35524871-35524928)
chr5 (76-124)||(38129126-38129174)
[»] chr4 (7 HSPs)
chr4 (75-140)||(36248398-36248463)
chr4 (228-298)||(52535434-52535504)
chr4 (75-123)||(13924792-13924840)
chr4 (75-163)||(24666128-24666216)
chr4 (125-169)||(52535909-52535952)
chr4 (76-139)||(6256763-6256826)
chr4 (78-144)||(47764081-47764147)
[»] chr2 (4 HSPs)
chr2 (76-143)||(30201969-30202036)
chr2 (75-143)||(30193211-30193279)
chr2 (75-123)||(1141299-1141347)
chr2 (71-123)||(7754968-7755020)
[»] chr6 (1 HSPs)
chr6 (74-151)||(16718967-16719044)
[»] chr8 (5 HSPs)
chr8 (76-125)||(22632967-22633016)
chr8 (77-125)||(22632323-22632371)
chr8 (75-123)||(27243445-27243493)
chr8 (75-123)||(27255020-27255068)
chr8 (75-123)||(35399944-35399992)
[»] chr1 (3 HSPs)
chr1 (76-125)||(26240114-26240163)
chr1 (76-125)||(26240870-26240919)
chr1 (75-123)||(50657142-50657190)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 49349676 - 49349806
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaatgttcgagatttgat-gaannnnn 174  Q
    ||||||||||| ||||||||||||||||  || |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |||         
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagcatgtaaaatatatcattagattaaattaatgtttgagatttgatggaaaaaaa 49349775  T
Q  175 nnnagaacatctatgtttcgtcacatacaat 205  Q
       ||||||||||||||| ||||||||||||    
T  49349776 ttgagaacatctatgttttgtcacatacaat 49349806  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 52924481 - 52924414
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    ||||||||||||||||||||| ||||||  || |||||||||| ||||| || |||||||||||||||    
T  52924481 ggtggattctaaggtgagggagcaattaagtccctcaccggtgcaccatctataatatatcattagat 52924414  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 3584004 - 3584072
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    |||||||||||| ||||||||| |||||| ||| |||||||||| ||||  || | | |||||||||||    
T  3584004 tggtggattctagggtgagggagcaattaaatccctcaccggtgtaccacttatattttatcattagat 3584072  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 36611543 - 36611465
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaatg 153  Q
    |||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | || ||| ||||||||| ||||||||    
T  36611543 tggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatg 36611465  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 44120358 - 44120425
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    ||||||||||||||||||||| ||||||  || |||||||||| ||||| || |||||||||||||||    
T  44120358 ggtggattctaaggtgagggagcaattaagtccctcaccggtgtaccatctataatatatcattagat 44120425  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 40485160 - 40485226
Alignment:
Q  9 ttaagaataagtacaaccgagacnnnnnnntattgaaaagtaaatacggaagaaaacatatgatttt 75  Q
    ||||||||||| |||||||||||       |||||||||||||||||||||||||||| ||||||||    
T  40485160 ttaagaataagcacaaccgagacaaaaaaatattgaaaagtaaatacggaagaaaacaaatgatttt 40485226  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 8755165 - 8755098
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    ||||| |||||||||||||||  ||||| ||| |||||||||| ||||| || |||||| ||||||||    
T  8755165 ggtgggttctaaggtgagggagaaattaaatccctcaccggtgtaccatctataatataccattagat 8755098  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 28007157 - 28007207
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgt 126  Q
    ||||||||||| ||||||||| ||||||  || ||||||||||||||||||    
T  28007157 ggtggattctagggtgagggagcaattaagtccctcaccggtggaccatgt 28007207  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 24565573 - 24565650
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaatg 153  Q
    ||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | || ||| ||||||||| ||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatg 24565650  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 24606609 - 24606686
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaatg 153  Q
    ||||||||||| |||||||| ||||||| ||| ||||||||||||||||| | || ||| ||||||||| ||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatg 24606686  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 35524928 - 35524871
Alignment:
Q  73 tttggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaa 130  Q
    |||||||||||||| ||||||||||||||||  |  ||||||||||||||||| ||||    
T  35524928 tttggtggattctagggtgagggatcaattaagtttctcaccggtggaccatgaaaaa 35524871  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 38129126 - 38129174
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccat 124  Q
    ||||||||||||||||||||| ||||||  || |||||||||| |||||    
T  38129126 ggtggattctaaggtgagggagcaattaagtccctcaccggtgtaccat 38129174  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 36248398 - 36248463
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcatta 140  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||||||||| |||||| |||||    
T  36248398 tggtgaattctaaggtgagggagcaattaaatccctcaccggtggaccatgtataatataccatta 36248463  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 52535504 - 52535434
Alignment:
Q  228 cttcatcctctctgccccaaacattttttccaactattcatggttgcaatcttttactttctaattactgc 298  Q
    ||||||||||  ||||| |||||| || |||||| |||||| |||||| ||||||||||||| ||||||||    
T  52535504 cttcatcctccgtgcccgaaacatcttctccaacgattcatagttgcactcttttactttctgattactgc 52535434  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 13924792 - 13924840
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    |||||||||||| |||||||| ||||||| ||| |||||||||||||||    
T  13924792 tggtggattctagggtgagggctcaattaaatccctcaccggtggacca 13924840  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 24666128 - 24666216
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaatgttcgagattt 163  Q
    |||||||||||| ||||||||||||||||  || |||||||||| ||||||  ||| ||| |||| |||  |||||||| || ||||||    
T  24666128 tggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatgacaaaaataccattcgatctaattaatggtctagattt 24666216  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 52535952 - 52535909
Alignment:
Q  125 gtaaaatatatcattagattaaattaatgttcgagatttgatgaa 169  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  52535952 gtaaaatatatcattagatt-aattaatgttccagatttgatgaa 52535909  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 6256763 - 6256826
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcatt 139  Q
    ||||||||||||||||||| | ||||||  || |||||||||| ||||| || |||||||||||    
T  6256763 ggtggattctaaggtgaggaaacaattaggtctctcaccggtgtaccatttataatatatcatt 6256826  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 47764147 - 47764081
Alignment:
Q  78 tggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagatt 144  Q
    ||||||||| ||| |||| ||||| | ||| ||||||||||||||||| |||||||| ||| |||||    
T  47764147 tggattctagggtaagggttcaatcaaatccctcaccggtggaccatgaaaaatataccataagatt 47764081  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 30202036 - 30201969
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    ||||||||||||||||||||| ||||||  || |||||||||||||||| || |||||| ||||||||    
T  30202036 ggtggattctaaggtgagggagcaattaagtccctcaccggtggaccatctataatataccattagat 30201969  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 30193211 - 30193279
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagat 143  Q
    |||||||||||||||||||||| || |||  || |||| || |||| |||||| |||||||||||||||    
T  30193211 tggtggattctaaggtgagggaacagttaagtccctcatcgatggatcatgtataatatatcattagat 30193279  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 1141299 - 1141347
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    |||||||||||||||||||||| |||| |  || |||||||||||||||    
T  1141299 tggtggattctaaggtgagggagcaatgaagtccctcaccggtggacca 1141347  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 7755020 - 7754968
Alignment:
Q  71 attttggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    |||| ||||||||||| ||||||||||||||||  ||  ||||||||||||||    
T  7755020 atttgggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 16719044 - 16718967
Alignment:
Q  74 ttggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatgtaaaatatatcattagattaaattaa 151  Q
    ||||||||||||| ||||| ||||||||||  || ||||||||||||||||| | || ||||| ||||||| ||||||    
T  16719044 ttggtggattctagggtgacggatcaattaagtccctcaccggtggaccatgaacaaaatatcgttagatttaattaa 16718967  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 22633016 - 22632967
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatg 125  Q
    ||||||||||| ||||||||||||||||  || |||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggaccatg 22632967  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 22632323 - 22632371
Alignment:
Q  77 gtggattctaaggtgagggatcaattatatcgctcaccggtggaccatg 125  Q
    |||||||||| ||||||||||||||||  || |||||||||||||||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggaccatg 22632371  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 27243445 - 27243493
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    ||||||||| ||||| |||||||||||||  || |||||||||||||||    
T  27243445 tggtggattataaggcgagggatcaattaagtccctcaccggtggacca 27243493  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 27255020 - 27255068
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    ||||||||| ||||| |||||||||||||  || |||||||||||||||    
T  27255020 tggtggattataaggcgagggatcaattaagtccctcaccggtggacca 27255068  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 35399992 - 35399944
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    |||||||||||| | |||||||||||| | ||| |||||||||||||||    
T  35399992 tggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 35399944  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 26240114 - 26240163
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatg 125  Q
    ||||||||||| ||||||||||||||||  || |||||||||| ||||||    
T  26240114 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccatg 26240163  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 26240919 - 26240870
Alignment:
Q  76 ggtggattctaaggtgagggatcaattatatcgctcaccggtggaccatg 125  Q
    ||||||||||| |||||||| |||||||  || |||||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggaccatg 26240870  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 50657190 - 50657142
Alignment:
Q  75 tggtggattctaaggtgagggatcaattatatcgctcaccggtggacca 123  Q
    ||||||||||||||| |||||| ||||||  || |||||||||||||||    
T  50657190 tggtggattctaaggcgagggagcaattaagtccctcaccggtggacca 50657142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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