View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_44 (Length: 311)
Name: NF0714_low_44
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_44 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 51674635 - 51674345
Alignment:
| Q |
21 |
acatcatcaattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcatgctcaacacacagactaataaatcactcccactatt |
120 |
Q |
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| T |
51674635 |
acatgatcaattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcatgctcaacacacagactaataaatcactcccactatt |
51674536 |
T |
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| Q |
121 |
acaaatatattgatatttaaggtcgcacatttcattttaaagcactgaaaatatgagcagtgaaacaagaatcattgccataaacttcattgaagaaaat |
220 |
Q |
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| T |
51674535 |
acaaatatattgatatttaaggtcgcacatttcattttaaagcactgaaaatatgagcagtgaaacaagaatcattgccataaacttcattgaagaaaat |
51674436 |
T |
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| Q |
221 |
aaaaccatacttttttaagaacaactttcttctgtgttattttctgaagcatcaaatttctccaggcacttctttaatggcatcttcaccc |
311 |
Q |
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| T |
51674435 |
aaaaccatacttttttcagaacaactttcttctgtgttattttctgaagcatcaaatttcgccaggcacttctttaatggcatcttcaccc |
51674345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 7736197 - 7736117
Alignment:
| Q |
148 |
catttcattttaaagcactgaaaatatgagcagtgaaacaagaatcattgccataaacttcattgaagaaaataaaaccat |
228 |
Q |
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| T |
7736197 |
catttcattttcaagcactgaaaatatgagcaatgaaatatcaataattgccataagctttattaaagaaaataagaccat |
7736117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 7688517 - 7688575
Alignment:
| Q |
28 |
caattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcatgc |
86 |
Q |
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| T |
7688517 |
caattgagaaatcaaggacaatggcagtagcatatttcaaaataaaatcaagcccatgc |
7688575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 7736759 - 7736701
Alignment:
| Q |
28 |
caattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcatgc |
86 |
Q |
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| T |
7736759 |
caattgagaaatcaaggacaatggcagtagcatatttcaaaataaaatcaagcccatgc |
7736701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 42403223 - 42403278
Alignment:
| Q |
29 |
aattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcat |
84 |
Q |
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| T |
42403223 |
aattgagaaaccaaggacaatgacagtagaatattgcaaagtaaaatcaagctcat |
42403278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 42403398 - 42403453
Alignment:
| Q |
29 |
aattgaaaaatcaaggacaatgacagtagcatattgcaaaatgaaatcgagctcat |
84 |
Q |
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|||||| ||| |||||||||||||||||| |||||||||| | ||||| ||||||| |
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| T |
42403398 |
aattgagaaaccaaggacaatgacagtagaatattgcaaagtaaaatcaagctcat |
42403453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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