View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_48 (Length: 297)
Name: NF0714_low_48
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 41036448 - 41036178
Alignment:
| Q |
1 |
gtatgatagcctatatgtttagtttcacttctacactcactattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatactgcttt |
100 |
Q |
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| T |
41036448 |
gtatgatagcctatatgtttagtttcacatctacactcgctattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatactgcttt |
41036349 |
T |
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| Q |
101 |
gatccttacacatattggacagtgatctgccgcaaaaagaaaccacgaaacaatagaaatcatgacgagccatgtggaccttatcagactgatcgagaaa |
200 |
Q |
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| T |
41036348 |
gatccttacacatattggacagtgatctaccgcaaaaagaaaccacgaaacaatagaaatcatgacgagccatgtggaccttatcagac----cgagaaa |
41036253 |
T |
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| Q |
201 |
gcagtctacaatagactgacacagcagcatgagtaatattccctagaatcttacaattacccttaatatgatgat |
275 |
Q |
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| T |
41036252 |
gcaatctacaatagactgacacagcagcatgagtaatattccctagaatcttacaattacccttaatattatgat |
41036178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 41030861 - 41030621
Alignment:
| Q |
1 |
gtatgatagcctatatgtttagtttcact---tctacactcactattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatactgc |
97 |
Q |
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|||||||||||| ||||||| ||||||| || ||||||||||| || || |||||||||||||| || ||||||||| |||||||| ||| || || |
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| T |
41030861 |
gtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaacagtgatttaatagaaactacaaactatagc |
41030762 |
T |
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| Q |
98 |
tttgatccttacacatattggacagtgatctgccgcaaaaaga---aaccacgaaacaatagaaatcatgacgagccatgtggaccttatcagactgatc |
194 |
Q |
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| T |
41030761 |
tttgatccttatgcgtatcggaaactgatccaccacaaaaacaaacaactacgcagcattagaaatcgtgacgagccacatggaccttatca----gatc |
41030666 |
T |
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| Q |
195 |
gagaaagcagtctacaatagactgacacagcagcatgagtaatat |
239 |
Q |
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| T |
41030665 |
gagaaagcaacctatggtagactgacacagcagcatgagtgatat |
41030621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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