View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_52 (Length: 283)

Name: NF0714_low_52
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_52
NF0714_low_52
[»] scaffold0091 (3 HSPs)
scaffold0091 (206-283)||(29057-29134)
scaffold0091 (56-143)||(28907-28994)
scaffold0091 (56-128)||(24710-24782)
[»] chr6 (4 HSPs)
chr6 (206-283)||(14989413-14989490)
chr6 (208-283)||(14980301-14980376)
chr6 (56-130)||(14980458-14980532)
chr6 (206-243)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (206-283)||(13882274-13882351)
chr1 (206-283)||(51658700-51658777)
chr1 (56-130)||(13882462-13882536)
chr1 (56-127)||(51658854-51658925)
chr1 (221-274)||(1567113-1567166)
[»] scaffold0218 (2 HSPs)
scaffold0218 (207-283)||(14378-14454)
scaffold0218 (56-143)||(14227-14314)
[»] scaffold0003 (2 HSPs)
scaffold0003 (206-281)||(130795-130870)
scaffold0003 (56-130)||(130623-130697)
[»] chr3 (9 HSPs)
chr3 (209-283)||(16642300-16642374)
chr3 (208-283)||(4712838-4712913)
chr3 (206-283)||(14055075-14055152)
chr3 (206-283)||(14062816-14062893)
chr3 (56-130)||(16642123-16642197)
chr3 (56-130)||(4712995-4713069)
chr3 (210-274)||(13926896-13926960)
chr3 (62-130)||(14062981-14063049)
chr3 (56-129)||(14055221-14055294)
[»] chr7 (10 HSPs)
chr7 (206-283)||(16060512-16060589)
chr7 (206-283)||(48376787-48376864)
chr7 (56-143)||(16060364-16060449)
chr7 (56-129)||(9080196-9080269)
chr7 (56-118)||(48376627-48376689)
chr7 (56-118)||(16069015-16069077)
chr7 (206-274)||(4531797-4531865)
chr7 (206-243)||(9080338-9080375)
chr7 (221-267)||(37945878-37945924)
chr7 (206-238)||(37946032-37946064)
[»] scaffold0063 (2 HSPs)
scaffold0063 (56-143)||(28443-28528)
scaffold0063 (206-244)||(28342-28380)
[»] chr8 (5 HSPs)
chr8 (206-269)||(23657751-23657814)
chr8 (56-117)||(23657638-23657699)
chr8 (56-117)||(23658413-23658474)
chr8 (206-283)||(23658526-23658611)
chr8 (56-118)||(17862251-17862313)
[»] scaffold1269 (1 HSPs)
scaffold1269 (229-283)||(1-55)
[»] scaffold0061 (1 HSPs)
scaffold0061 (56-130)||(18097-18171)
[»] scaffold1043 (1 HSPs)
scaffold1043 (56-118)||(1432-1494)
[»] chr2 (1 HSPs)
chr2 (206-274)||(23656508-23656576)
[»] chr4 (1 HSPs)
chr4 (56-113)||(19728457-19728514)
[»] chr5 (3 HSPs)
chr5 (56-113)||(24832209-24832266)
chr5 (61-118)||(25756788-25756845)
chr5 (61-118)||(25790956-25791013)
[»] scaffold0319 (1 HSPs)
scaffold0319 (252-283)||(13608-13639)


Alignment Details
Target: scaffold0091 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 29057 - 29134
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 28907 - 28994
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 24710 - 24782
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 14989490 - 14989413
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14989413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 14980376 - 14980301
Alignment:
Q  208 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 14980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 14980532 - 14980458
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 14980458  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcat 243  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 13882351 - 13882274
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 13882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 51658777 - 51658700
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 51658700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 13882536 - 13882462
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||  ||| |||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatatat 13882462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 51658925 - 51658854
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtata 127  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 1567166 - 1567113
Alignment:
Q  221 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc 274  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatc 1567113  T

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Target: scaffold0218 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 14378 - 14454
Alignment:
Q  207 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 14227 - 14314
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 143  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||| ||| |||||||  |||||||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacacaccaccc 14314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 130623 - 130697
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 130697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 16642300 - 16642374
Alignment:
Q  209 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 16642374  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 4712913 - 4712838
Alignment:
Q  208 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 4712838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 14055152 - 14055075
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14055075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 14062893 - 14062816
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14062816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 16642123 - 16642197
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatat 16642197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4713069 - 4712995
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatatat 4712995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  210 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 274  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 14063049 - 14062981
Alignment:
Q  62 attagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatatat 14062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 14055294 - 14055221
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 129  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| ||| ||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatata 14055221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 16060512 - 16060589
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatc 16060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 48376787 - 48376864
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 48376864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 16060364 - 16060449
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 9080196 - 9080269
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatata 9080269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 48376627 - 48376689
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtca 48376689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 16069077 - 16069015
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtca 16069015  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 4531865 - 4531797
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 274  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatc 4531797  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcat 243  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  221 atataaacattatcatttctcatcgtatttatttaattacatatata 267  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  206 ctcatcatcactaacatataaacattatcattt 238  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: scaffold0063 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 28528 - 28443
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatatttacacaccaccc 143  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  || ||||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatc 244  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 269  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 23657638 - 23657699
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtc 23657699  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 23658413 - 23658474
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtc 23658474  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 23658526 - 23658611
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatc 23658611  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 17862313 - 17862251
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| ||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattataccttatcattctcatcgtca 17862251  T

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Target: scaffold1269 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 1 - 55
Alignment:
Q  229 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 283  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 55  T

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Target: scaffold0061 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 18171 - 18097
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtcagtatgtatatat 130  Q
    |||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||| ||| |||||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatatat 18097  T

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Target: scaffold1043 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 1494 - 1432
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| ||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtca 1432  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  206 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 274  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 19728514 - 19728457
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcat 113  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  ||||||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatactttatcattctcat 19728457  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 24832266 - 24832209
Alignment:
Q  56 atgtatattagacaccatcattcaagtcatcatcataattatacgtcttcattctcat 113  Q
    |||||||||||  | |||||||||| |||||||||||||||||| || ||||||||||    
T  24832266 atgtatattaggaatcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 25756845 - 25756788
Alignment:
Q  61 tattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25756845 tatttgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25756788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 25790956 - 25791013
Alignment:
Q  61 tattagacaccatcattcaagtcatcatcataattatacgtcttcattctcatagtca 118  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| ||||    
T  25790956 tattcgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtca 25791013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 13639 - 13608
Alignment:
Q  252 tttaattacatatatataatatcttcgtcatc 283  Q
    ||||||||||||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatc 13608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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