View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_55 (Length: 264)
Name: NF0714_low_55
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27521359 - 27521516
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
27521359 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatgatg |
27521458 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521459 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
27521516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 27462076 - 27461919
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
27462076 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatg |
27461977 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
158 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27461976 |
atggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgt |
27461919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 18986176 - 18986019
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
18986176 |
agactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatgatg |
18986077 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
158 |
Q |
| |
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||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
18986076 |
atggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgt |
18986019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 27482215 - 27482058
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
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|||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
27482215 |
agactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatg |
27482116 |
T |
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| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
158 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27482115 |
atggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgt |
27482058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 1758224 - 1758067
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1758224 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatg |
1758125 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgt |
158 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
1758124 |
atggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgt |
1758067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29569724 - 29569866
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
29569724 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatgatg |
29569823 |
T |
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| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29569824 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
29569866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 27918726 - 27918583
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
27918726 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatgatg |
27918627 |
T |
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| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
144 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27918626 |
atggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 29568393 - 29568536
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
29568393 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatgatg |
29568492 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
144 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
29568493 |
atggtgaatggcgtttgaaagagtttttgtgagtgtgatgatga |
29568536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 29168331 - 29168171
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| |
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| T |
29168331 |
agactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatgatg |
29168232 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgt |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
29168231 |
atggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgt |
29168171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 29425372 - 29425232
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29425372 |
agactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatg |
29425273 |
T |
|
| Q |
101 |
at---ggtgaacggcgtttgacagagttgttgtgagtgtga |
138 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |
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| T |
29425272 |
atggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 25518560 - 25518400
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| |
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|
| T |
25518560 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatg |
25518461 |
T |
|
| Q |
101 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgt |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25518460 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgt |
25518400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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