View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_57 (Length: 263)

Name: NF0714_low_57
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_57
NF0714_low_57
[»] chr4 (2 HSPs)
chr4 (1-242)||(3254377-3254623)
chr4 (31-75)||(3274011-3274055)
[»] chr5 (1 HSPs)
chr5 (170-217)||(24872946-24872993)
[»] chr6 (1 HSPs)
chr6 (158-235)||(12645266-12645343)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3254377 - 3254623
Alignment:
Q  1 ttgctatttagtagaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttcttaaaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254377 ttgctatttagtcgaaaattatttggttgtttgttgttgttattttgtaatttctctttcctattttttccaacactctttagttttcctttcttaaaaa 3254476  T
Q  101 tatttgttagacccaagtatatatatgaaggtggcctaggaat-----------aagaaaccaacacatgtctccttgagaagctagtttgggatatgtt 189  Q
    |||||||||||||||||      ||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  3254477 tatttgttagacccaag------tatgaaggtggcctaggaatcagaacagccagagaaaccaacacatgtctccttgagaagctagtttgggatatgtt 3254570  T
Q  190 tcaatattctaataaattatgggttgatctcctctccgataagtatgatgatg 242  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3254571 ccaatcttctaataaattatgggttgatctcctctccgataagtatgatgatg 3254623  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 3274011 - 3274055
Alignment:
Q  31 ttgttgttgttattttgtaatttctctttcctattttttccaaca 75  Q
    ||||||||| | | ||||||||||||||||||| |||||||||||    
T  3274011 ttgttgttgatgtgttgtaatttctctttcctaatttttccaaca 3274055  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 24872946 - 24872993
Alignment:
Q  170 aagctagtttgggatatgtttcaatattctaataaattatgggttgat 217  Q
    ||||| |||||||||||| |||||||||| || |||||||||||||||    
T  24872946 aagcttgtttgggatatggttcaatattcaaagaaattatgggttgat 24872993  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 12645343 - 12645266
Alignment:
Q  158 tgtctccttgagaagctagtttgggatatgtttcaatattctaataaattatgggttgatctcctctccgataagtat 235  Q
    |||||||||  ||||||||||||||||||  | ||||  || || |||||||||||||||||||| || || ||||||    
T  12645343 tgtctcctttggaagctagtttgggatattgtccaatgctccaaaaaattatgggttgatctcctttctgacaagtat 12645266  T

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