View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_58 (Length: 263)
Name: NF0714_low_58
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 44215698 - 44215843
Alignment:
| Q |
94 |
ccgtccttcccaccgtcgccgtcatccatcaccacattcgtcgtttcatctcgtcttcaatcatagatgtgaccttcgatctcgtcttctccatcacgcc |
193 |
Q |
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| T |
44215698 |
ccgtccttaccaccgtcgccgtcatccatcaccacattcgtcgtttcatctcgtcttcaataatagatctgaccttcgatctcgtcttctccatcacgcc |
44215797 |
T |
|
| Q |
194 |
gtcggcgaccttcgcgttaccatcacgccgtcggtgacctctgtcg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44215798 |
gtcggcgaccttcgcgttaccatcacgccgtcggtgacctctgtcg |
44215843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 44215662 - 44215700
Alignment:
| Q |
25 |
catcaccaccaccatcctcaccacaactccatcacgccg |
63 |
Q |
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| T |
44215662 |
catcaccaccaccatcctcaccacaactccatcacgccg |
44215700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 9190778 - 9190898
Alignment:
| Q |
104 |
caccgtcgccgtcatccatcaccacattcgtcgtttcatctcgtcttcaatcatagatgtgaccttcgatctcgtcttctccatcacgccgtcggcgacc |
203 |
Q |
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|||||||||||||||||||||| ||||||| ||| || | ||||||||| |||| |||||||| ||||||||||||||||||| || |||||||| |
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| T |
9190778 |
caccgtcgccgtcatccatcac---attcgtcattttctcgcatcttcaatcttagacctgaccttcaatctcgtcttctccatcacacctccggcgacc |
9190874 |
T |
|
| Q |
204 |
ttcgcgttaccatcacgccgtcgg |
227 |
Q |
| |
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|||| | ||||||||||||||| |
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| T |
9190875 |
gtcgcttccccatcacgccgtcgg |
9190898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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