View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_64 (Length: 251)
Name: NF0714_low_64
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_64 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 12058859 - 12058638
Alignment:
| Q |
30 |
gttataaatccacaacacacagagagagccctgtacacaaagtaggacattagaaattcagctcgaatccctccatgcaaaccaccacaatctcttttcc |
129 |
Q |
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| T |
12058859 |
gttataaatccaacacacacagagagagccctgtacacaaagtaggacattagaaattcagctcgaatccctccatgcaaaccaccacaatctcttttcc |
12058760 |
T |
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| Q |
130 |
aacatcatcttctatccatacaattttttgggtttcaactccacagttaattttccattttggaagaaaatttcatctggaacgttgctgaagacataga |
229 |
Q |
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| T |
12058759 |
aacatcatcttctatccatacaattttttgggtttcaactccacagttaattttccattttggaagaagatttcatctggaacgttgctgaagacataga |
12058660 |
T |
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| Q |
230 |
tatcatgggacctaaagattgc |
251 |
Q |
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| T |
12058659 |
tatcatgggacctaaagattgc |
12058638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 12040272 - 12040211
Alignment:
| Q |
75 |
gacattagaaattcagctcgaatccctccatgcaaaccaccacaatctcttttccaacatca |
136 |
Q |
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| T |
12040272 |
gacattagaaattaagctcgattccctccatgaaaaccactacactctctttcccaacatca |
12040211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 12040143 - 12040083
Alignment:
| Q |
169 |
tccacagttaattttccattttggaagaaaatttcatctggaacgttgctgaagacataga |
229 |
Q |
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| T |
12040143 |
tccaccgtttattttccattttggaagaagattgcatctggaacgttggttaagacataga |
12040083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 12028368 - 12028324
Alignment:
| Q |
204 |
atctggaacgttgctgaagacatagatatcatgggacctaaagat |
248 |
Q |
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| T |
12028368 |
atctggaacgttggttaagacatagatatcatgggacccaaagat |
12028324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 12028530 - 12028482
Alignment:
| Q |
45 |
cacacagagagagccctgtacacaaagtaggacattagaaattcagctc |
93 |
Q |
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| T |
12028530 |
cacacacagagagccctgtacacaaagaaggacataagaaattaagctc |
12028482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 12028469 - 12028425
Alignment:
| Q |
129 |
caacatcatcttctatccatacaattttttgggtttcaactccac |
173 |
Q |
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| T |
12028469 |
caacatcatctcctattcatataatttttcgggtttcaactccac |
12028425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 29074541 - 29074619
Alignment:
| Q |
170 |
ccacagttaattttccattttggaagaaaatttcatctggaacgttgctgaagacatagatatcatgggacctaaagat |
248 |
Q |
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| T |
29074541 |
ccaccgttgattttccattttggaagaaggttgcatctggaacgttggttaagacttaaacatcatgggacccaaagat |
29074619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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