View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_66 (Length: 251)

Name: NF0714_low_66
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_66
NF0714_low_66
[»] chr1 (1 HSPs)
chr1 (11-250)||(48820964-48821203)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 48820964 - 48821203
Alignment:
Q  11 cacagacctagtgtcttgataatttatgaagtttatgaaaacttagatataactatcagcactgctaaatttctctattcatcgttcttactagaatttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48820964 cacagacctagtgtcttgataatttatgaagtttatgaaaacttagatataactatcagcactgctaaatttctctattcatcgttcttactagaatttt 48821063  T
Q  111 atagctgataaggtttatccagccttaattcgctcatttgggttcatctgttgatgaaccaatcaatagtagtggtgcatatgtatgcattctattcttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48821064 atagctgataaggtttatccagccttaattcgctcatttgggttcatctgttgatgaaccaatcaatagtagtggtgcatatgtatgcattctattcttg 48821163  T
Q  211 gaggctgttgtcaccatttgacaaataatatatagttaat 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48821164 gaggctgttgtcaccatttgacaaataatatatagttaat 48821203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University