View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0714_low_69 (Length: 250)
Name: NF0714_low_69
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_69 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr2 (5 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0009 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 37714685 - 37714845
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttc-ccactttggccattttgcgggtctaccgc |
189 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37714685 |
ttgtggcatctcatatataagtgggttggtatttctttcatctcaccagacttggttactgatcactttcaccactttggccattttgcgggtctaccgc |
37714784 |
T |
|
| Q |
190 |
ggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37714785 |
ggtatactcatatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
37714845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 9740649 - 9740489
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttc-ccactttggccattttgcgggtctaccgc |
189 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||| |||| ||||||||||| |||| || | ||||||||| |||| |||||| | ||| |
|
|
| T |
9740649 |
ttgtggcatctcatttataagtgggctggtatcactttcatatcacctcacttggttactgatcatttccgccactttggtcattaggcgggtttgccgt |
9740550 |
T |
|
| Q |
190 |
ggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
||||||| || ||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9740549 |
ggtatacacaaatttatctttaagttatttggcactctactgtttgggtcatttggaagga |
9740489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 44097683 - 44097523
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttcc-cactttggccattttgcgggtctaccgc |
189 |
Q |
| |
|
||||| ||||| |||||||||||| ||| |||||||||||| || | ||||||||||| ||||||| | |||||||| ||||| |||||| | |||| |
|
|
| T |
44097683 |
ttgtggcatcttatttataagtggattgatatctctttcatatctcccgacttggttaccgatcacttccatcactttggtcatttagcgggtttgccgc |
44097584 |
T |
|
| Q |
190 |
ggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
| ||||| |||| ||| || ||||||||||| |||| ||||||||| ||||||||||||| |
|
|
| T |
44097583 |
gatatacacacagttacctccaagtgatttgacactatactgtttgagtcatttggaagga |
44097523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 37714615 - 37714663
Alignment:
| Q |
40 |
ctgtgttggaggttgtggcaacccggtgacagcggttcacttcattttg |
88 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
37714615 |
ctgtgttggaggctgtggcaacccggagacagcggttcccttcattttg |
37714663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 7546291 - 7546330
Alignment:
| Q |
92 |
tgtgacatctcatttataagtgggttggtatctctttcat |
131 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
7546291 |
tgtggcatctcatttatcagtgggttggtatctctttcat |
7546330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 44097761 - 44097705
Alignment:
| Q |
32 |
gacaacagctgtgttggaggttgtggcaacccggtgacagcggttcacttcattttg |
88 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||| ||| || ||||||||||||||| |
|
|
| T |
44097761 |
gacaacggttgtgttggaggatgtggcagcccggagacggcagttcacttcattttg |
44097705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 11973238 - 11973397
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttcccactttggccattttgcgggtctaccgcg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11973238 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcaccagacttggttacttatcacttttccactttggccattttgcgggtctaccggc |
11973337 |
T |
|
| Q |
191 |
gtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
11973338 |
gtatactcacatttatcttcaagtaatttggcactctattgtttgggtcatttggaagga |
11973397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 42052506 - 42052666
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttc-ccactttggccattttgcgggtctaccgc |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| | ||| ||| ||||||| |||||| ||| || |
|
|
| T |
42052506 |
ttgtggcatctcatttataagtgggttggtatctctttcatatcaccagacttggttactgatcacttccaccaatttagccatttggcgggtttactgc |
42052605 |
T |
|
| Q |
190 |
ggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42052606 |
ggtatacatacgtttatctccaagtgatttggcactctactgtttgggtcatttggaagga |
42052666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 11973150 - 11973221
Alignment:
| Q |
22 |
tcatcagaaagacaacagctgtgttggaggttgtggcaacccggtgacagcggttcacttcattttgggttg |
93 |
Q |
| |
|
||||||| | |||||| | ||||||||| | |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11973150 |
tcatcaggaggacaacggttgtgttggaagctgtggcaacccggtgagagcggttcacttcattttgggttg |
11973221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 32626886 - 32626933
Alignment:
| Q |
203 |
ttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
32626886 |
ttatctccaagtgatttggcatactactatttggatcatttggaagga |
32626933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 42052428 - 42052480
Alignment:
| Q |
32 |
gacaacagctgtgttggaggttgtggcaacccggtgacagcggttcacttcat |
84 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||| ||| |||||||||||||| |
|
|
| T |
42052428 |
gacaacggttgtgttggaggctgtggcagcccggagacggcggttcacttcat |
42052480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 29001910 - 29001756
Alignment:
| Q |
97 |
catctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttcc-cactttggccattttgcgggtctaccgcggtata |
195 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| || | |||||||||| | ||||| | |||||||| ||||| |||||| ||||||| |||| |
|
|
| T |
29001910 |
catcttatttataagtggtttggtatctctttcatatctccccgcttggttactgaccacttccatcactttggtcatttggcgggtttaccgcgatata |
29001811 |
T |
|
| Q |
196 |
ctcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
| |||||||| || ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
29001810 |
cacacatttacctccaagtgatttggcactctactatttgggtcatttggaagga |
29001756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 26527548 - 26527400
Alignment:
| Q |
91 |
ttgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactt-tcccactttggccattttgcgggtctaccgc |
189 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
26527548 |
ttgtggcatctcatttataagtgggttggtatctctttcatatcatcagacttgaatactgatcacttcaaccactttggccatttggcgggtttac--- |
26527452 |
T |
|
| Q |
190 |
ggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaa |
247 |
Q |
| |
|
| |||||||| || ||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
26527451 |
------cacacatttacctccaagtgatttgacactctactgtttgggtcatttggaa |
26527400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 26755881 - 26756038
Alignment:
| Q |
92 |
tgtgacatctcatttataagtgggttggtatctctttcatctcactagacttggttactaatcactttc-ccactttggccattttgcgggtctaccgcg |
190 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| | || ||||||||||| |||| || | ||| |||||| |||| |||||| | ||| |
|
|
| T |
26755881 |
tgtggcatctcgtttataagtgggttggtatctctttcattttacctcacttggttactgatcatttccaccaatttggcaatttggcgggt-tttcgca |
26755979 |
T |
|
| Q |
191 |
gtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
|
|
| T |
26755980 |
gtatacagacatttatcttcaagtgattt-gcactctaatgtttgggccatctggaagga |
26756038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 193648 - 193737
Alignment:
| Q |
161 |
ccactttggccattttgcgggtctaccgcggtatactcacatttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
||||||||||||||| |||||| | || || ||||| ||||||||||||||||||||||| ||||| | ||||||| | |||||||||| |
|
|
| T |
193648 |
ccactttggccatttggcgggtttcccacgatatacacacatttatcttcaagtgatttgacactccattgtttgggccttttggaagga |
193737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 9421443 - 9421492
Alignment:
| Q |
201 |
atttatcttcaagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9421443 |
atttacctccaagtgatttggcactctactgtttgggtcatttggaagga |
9421492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 22757446 - 22757406
Alignment:
| Q |
210 |
caagtgatttggcactctactgtttggatcatttggaagga |
250 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22757446 |
caagtgatttggcatactactgtttgggtcatttggaagga |
22757406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1235 times since January 2019
Visitors: 4365