View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_7 (Length: 489)
Name: NF0714_low_7
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 43 - 489
Target Start/End: Original strand, 34899398 - 34899844
Alignment:
| Q |
43 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
142 |
Q |
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| T |
34899398 |
cccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatat |
34899497 |
T |
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| Q |
143 |
aatttttgacttcttcaacnnnnnnn-tctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
241 |
Q |
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| T |
34899498 |
aatttttgacttcttcaacaaaaaaaatctatgaagaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaa |
34899597 |
T |
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| Q |
242 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagca |
341 |
Q |
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| T |
34899598 |
atgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagca |
34899696 |
T |
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| Q |
342 |
tatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagat |
441 |
Q |
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| T |
34899697 |
tatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagat |
34899796 |
T |
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| Q |
442 |
acatacctttcatgtttggtgagaatggaaggaaaattttgagactat |
489 |
Q |
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| T |
34899797 |
acatacctttcatgtttggtgagaatggaaggaaaattttgagactat |
34899844 |
T |
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