View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_70 (Length: 249)

Name: NF0714_low_70
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_70
NF0714_low_70
[»] chr4 (1 HSPs)
chr4 (17-236)||(18054713-18054931)
[»] scaffold0125 (1 HSPs)
scaffold0125 (17-236)||(10898-11116)
[»] chr6 (1 HSPs)
chr6 (17-192)||(19236138-19236306)
[»] chr7 (1 HSPs)
chr7 (17-113)||(24951713-24951809)
[»] chr2 (1 HSPs)
chr2 (75-236)||(14484240-14484400)
[»] chr8 (1 HSPs)
chr8 (17-98)||(17653483-17653564)
[»] chr5 (1 HSPs)
chr5 (17-45)||(25464209-25464237)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 18054713 - 18054931
Alignment:
Q  17 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttcannn 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  18054713 catcatctgtgacatctacccatcctgtgattccaaatcaacagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttcatt- 18054811  T
Q  117 nnnnattttaataataataattaataaaaagctctatccttttactggacgactaattaattcaattcttga-----aaatnnnnnnntaaatttaattt 211  Q
         |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||       ||||||||||||    
T  18054812 -----tttttattttaataattaataaaaagctctatccttttactggacgactaattaattcaattcttgaaaatgaaataaagaaataaatttaattt 18054906  T
Q  212 tatagtacttgatctcgccactgat 236  Q
    |||||||||||||||||||||||||    
T  18054907 tatagtacttgatctcgccactgat 18054931  T

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Target: scaffold0125 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 10898 - 11116
Alignment:
Q  17 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttcannn 116  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  10898 catcatctgtgacatctacccatcctgtgattccaaatcaacagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttcatt- 10996  T
Q  117 nnnnattttaataataataattaataaaaagctctatccttttactggacgactaattaattcaattcttga-----aaatnnnnnnntaaatttaattt 211  Q
         |||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||       |||| |||||||    
T  10997 -----tttttattttaataattaataaaaagctctatccttttactggacgactaattaattcaattcttgaaaatgaaataaagaaataaaattaattt 11091  T
Q  212 tatagtacttgatctcgccactgat 236  Q
    |||||||||||||||||||||||||    
T  11092 tatagtacttgatctcgccactgat 11116  T

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Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 19236306 - 19236138
Alignment:
Q  17 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttcannn 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||       
T  19236306 catcatctatgacatctacccatcctgtgattccaaatcaatagattttttgatcaacttatgagttgagtaaactaatcgaatgaaaatattttcatta 19236207  T
Q  117 nnnnattttaataataataattaataaaaagctctatccttttactggacgactaattaattcaattcttgaaaat 192  Q
        ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  19236206 ttttattttaat-------tttaataaaaagctctatccttttactggacgactaattaattcaattattaaaaat 19236138  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 24951713 - 24951809
Alignment:
Q  17 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24951713 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcgaatgaaaatattttca 24951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 14484240 - 14484400
Alignment:
Q  75 tcatgagttgagtaaactaatcgaatgaaaatattttcannnnnnnattttaataataataattaataaaaagctctatccttttactggacgactaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||        |||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  14484240 tcatgagttgagtaaactaatcgaatgaaaatattttcatt------tttttattttaataattaataaaaagctctatccttttactggacgactaatt 14484333  T
Q  175 aattcaattcttga-----aaatnnnnnnntaaatttaattttatagtacttgatctcgccactgat 236  Q
    ||||||||||||||     ||||       |||||||||||||||||||||||||||||||||||||    
T  14484334 aattcaattcttgaaaatgaaataaagaaataaatttaattttatagtacttgatctcgccactgat 14484400  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 17653483 - 17653564
Alignment:
Q  17 catcatctgtgacatctacccatcctgtgattccaaatcaatagatttattgatcaactcatgagttgagtaaactaatcga 98  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  17653483 catcatctgtgacatctacccatcctgtgattccaaatcaacagatttattgatcaactcattagttgagtaaactaatcga 17653564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 25464237 - 25464209
Alignment:
Q  17 catcatctgtgacatctacccatcctgtg 45  Q
    |||||||||||||||||||||||||||||    
T  25464237 catcatctgtgacatctacccatcctgtg 25464209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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