View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0714_low_76 (Length: 233)
Name: NF0714_low_76
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_76 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29305374 - 29305590
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29305374 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaatcagaaagaagtt |
29305473 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29305474 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctataagctttacaatccagagaccaagaaggtgatcatcagtaga |
29305573 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29305574 |
gatgtgacatttgatga |
29305590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45967641 - 45967857
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
45967641 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaataagaaagaagtt |
45967740 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45967741 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctataagctttacaatccagagaccaagaaggtgatcatcagtaga |
45967840 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45967841 |
gatgtgacatttgatga |
45967857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27728881 - 27728665
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27728881 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaatcagaaagaagtt |
27728782 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27728781 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaagacctataagctttacaatccagagaccaagaaggtgatcatcagtaga |
27728682 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27728681 |
gatgtgacatttgatga |
27728665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24148364 - 24148580
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24148364 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctaagagtttttggatgtattgcatatgctcatgtaccagatcaaatcagaaagaagtt |
24148463 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
24148464 |
agatgataaaggcgagagatgtatttttattggctactactcaaattcaaaggcttacaagctttataatccaaagaccaagaaggtgattatcagtaga |
24148563 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
24148564 |
gatgtgacttttcatga |
24148580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29280922 - 29280706
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29280922 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaatcagaaagaagtt |
29280823 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29280822 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctataagctttacaatccagagaccaagaaggtgatcatcagtaga |
29280723 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29280722 |
gatgtgacatttgatga |
29280706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12527668 - 12527452
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12527668 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaatcagaaagaagtt |
12527569 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
12527568 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctataagctttacaatccagagaccaagaagatgatcatcagtaga |
12527469 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12527468 |
gatgtgacatttgatga |
12527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35843354 - 35843570
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35843354 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaataagaaagaagtt |
35843453 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
35843454 |
agatgataaaggcaagagatgtatttttattggctactgctcaaattcaaaggcctataagttttacaatctagagaccaagaaggtgatcatcagtaga |
35843553 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35843554 |
gatgtgacatttgatga |
35843570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 42911781 - 42911565
Alignment:
| Q |
1 |
ccgaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42911781 |
ccgaagaagcagggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaatcagaaagaagtt |
42911682 |
T |
|
| Q |
101 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
42911681 |
agatgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctataagctttataatccagagaccaagaaggtgatcatcagtaga |
42911582 |
T |
|
| Q |
201 |
gatgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42911581 |
gatgtgacatttgatga |
42911565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 42302229 - 42302443
Alignment:
| Q |
3 |
gaagaagcatggagtggaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccagatcaaattagaaagaagttag |
102 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42302229 |
gaagaagcatggagcgcaaggaggccctcaatcaggcacctcagagtttttggatgtattgcttatgctcatgtaccaaatcaaattagaaagaagttag |
42302328 |
T |
|
| Q |
103 |
atgataaaggcgagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtagaga |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42302329 |
atgataaaggagagagatgtatttttattggctactgctcaaattcaaaggcctacaagctttacaatccagagaccaagaaggtgattatcagtaaaga |
42302428 |
T |
|
| Q |
203 |
tgtgacatttgatga |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42302429 |
tgtgacatttgatga |
42302443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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