View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0714_low_79 (Length: 218)
Name: NF0714_low_79
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0714_low_79 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 8360939 - 8360723
Alignment:
| Q |
1 |
tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatatatgttg |
100 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8360939 |
tatttcgttttgagcctttcatttattt-cttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacattcaattcatatatgttg |
8360841 |
T |
|
| Q |
101 |
acctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagtttatttttattaatccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8360840 |
acctaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatactttagatagtttatttttattaatccca |
8360741 |
T |
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| Q |
201 |
tttagataataaaaatcg |
218 |
Q |
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|||||||||||||||||| |
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| T |
8360740 |
tttagataataaaaatcg |
8360723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38412608 - 38412391
Alignment:
| Q |
1 |
tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatatatgttg |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38412608 |
tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatatatgttg |
38412509 |
T |
|
| Q |
101 |
acctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagtttatttttattaatccca |
200 |
Q |
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| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38412508 |
gcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatattttatttttattaatccca |
38412409 |
T |
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| Q |
201 |
tttagataataaaaatcg |
218 |
Q |
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|||||||||||||||||| |
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| T |
38412408 |
tttagataataaaaatcg |
38412391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 34612038 - 34612255
Alignment:
| Q |
1 |
tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatatatgttg |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34612038 |
tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatatatgttg |
34612137 |
T |
|
| Q |
101 |
acctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagtttatttttattaatccca |
200 |
Q |
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| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34612138 |
gcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatattttatttttattaatccca |
34612237 |
T |
|
| Q |
201 |
tttagataataaaaatcg |
218 |
Q |
| |
|
|||||||||||||||||| |
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| T |
34612238 |
tttagataataaaaatcg |
34612255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26908925 - 26908708
Alignment:
| Q |
1 |
tatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtaagtaacattcaattcatatatgttg |
100 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26908925 |
tatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacattcaattcatatatgttg |
26908826 |
T |
|
| Q |
101 |
acctaattttttacttttgccttgtgtaatctcttgactgcctgcttgacagaaacaaaaagcaaacaatacttcagatagtttatttttattaatccca |
200 |
Q |
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| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26908825 |
gcttaattttttactattgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatattttatttttattaatccca |
26908726 |
T |
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| Q |
201 |
tttagataataaaaatcg |
218 |
Q |
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|||||||||||||||||| |
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| T |
26908725 |
tttagataataaaaatcg |
26908708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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