View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0714_low_9 (Length: 469)

Name: NF0714_low_9
Description: NF0714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0714_low_9
NF0714_low_9
[»] chr1 (15 HSPs)
chr1 (99-350)||(23182117-23182368)
chr1 (162-292)||(4977555-4977685)
chr1 (162-292)||(5316053-5316183)
chr1 (162-292)||(21741545-21741675)
chr1 (162-292)||(50880843-50880972)
chr1 (229-292)||(50881019-50881082)
chr1 (291-346)||(4977317-4977370)
chr1 (229-270)||(4977399-4977440)
chr1 (229-270)||(5316230-5316271)
chr1 (66-98)||(23181930-23181962)
chr1 (291-345)||(5316300-5316352)
chr1 (414-445)||(21741266-21741297)
chr1 (414-445)||(23182432-23182463)
chr1 (308-346)||(50881224-50881262)
chr1 (291-346)||(21741365-21741418)
[»] chr8 (5 HSPs)
chr8 (145-350)||(45472543-45472753)
chr8 (162-289)||(41878463-41878590)
chr8 (291-346)||(41878720-41878773)
chr8 (66-98)||(45472430-45472462)
chr8 (414-445)||(45472817-45472848)
[»] chr5 (11 HSPs)
chr5 (162-292)||(23285542-23285672)
chr5 (161-292)||(27078486-27078617)
chr5 (162-292)||(22987101-22987231)
chr5 (161-292)||(30853563-30853693)
chr5 (162-277)||(16592486-16592601)
chr5 (291-346)||(30853820-30853873)
chr5 (291-345)||(23285369-23285421)
chr5 (291-346)||(27078734-27078787)
chr5 (229-270)||(23285450-23285491)
chr5 (414-445)||(27078855-27078886)
chr5 (291-336)||(22986932-22986975)
[»] chr4 (22 HSPs)
chr4 (162-291)||(9579110-9579239)
chr4 (162-291)||(9584805-9584934)
chr4 (162-291)||(48208744-48208873)
chr4 (162-297)||(35780161-35780296)
chr4 (162-292)||(23510470-23510600)
chr4 (162-289)||(54779733-54779860)
chr4 (162-292)||(10978401-10978531)
chr4 (162-292)||(34769191-34769321)
chr4 (162-292)||(47128280-47128410)
chr4 (171-263)||(10431126-10431218)
chr4 (291-346)||(10431065-10431118)
chr4 (291-346)||(47128527-47128580)
chr4 (291-346)||(54779970-54780023)
chr4 (291-346)||(23510291-23510344)
chr4 (229-270)||(47128457-47128498)
chr4 (291-346)||(35779987-35780039)
chr4 (414-445)||(23510192-23510223)
chr4 (414-445)||(34768912-34768943)
chr4 (414-445)||(35779887-35779918)
chr4 (414-445)||(54780091-54780122)
chr4 (308-350)||(34769007-34769049)
chr4 (414-443)||(10430968-10430997)
[»] chr2 (10 HSPs)
chr2 (172-292)||(29940216-29940336)
chr2 (171-292)||(34715855-34715976)
chr2 (171-292)||(34693443-34693564)
chr2 (291-345)||(34693691-34693743)
chr2 (291-345)||(34716103-34716155)
chr2 (308-346)||(40445468-40445506)
chr2 (229-270)||(29940128-29940169)
chr2 (229-270)||(40445383-40445424)
chr2 (414-445)||(34693812-34693843)
chr2 (414-445)||(34716224-34716255)
[»] chr6 (3 HSPs)
chr6 (162-292)||(19740859-19740989)
chr6 (291-346)||(19740680-19740733)
chr6 (414-445)||(19740581-19740612)
[»] chr3 (4 HSPs)
chr3 (162-288)||(3954512-3954638)
chr3 (197-292)||(8073704-8073799)
chr3 (308-346)||(3954328-3954366)
chr3 (229-270)||(8073616-8073657)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 99 - 350
Target Start/End: Original strand, 23182117 - 23182368
Alignment:
Q  99 tcattcatcagaaactcgcttgcagttgcagacagcagactctcattctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23182117 tcattcatcagaaactcgcttgcagttgcagacagcagactctcattctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatt 23182216  T
Q  199 tggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactgatttat 298  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23182217 tggtaagtaaagaaactctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactgatttct 23182316  T
Q  299 gcatatttatactgttttgggagtttttgttaaaattattcaaatttctgtg 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23182317 gcatatttataccgttttgggagtttttgttaaaattattcaaatttctgtg 23182368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 4977685 - 4977555
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  4977685 tttcaattggttttcccctttccaaaacaacattgtttggtaagtaaagaaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 4977586  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||||||||||||| ||||||||||    
T  4977585 agagatttgttgaatgttgaaaacaacactg 4977555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 5316053 - 5316183
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  5316053 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 5316152  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    | | |||||||||||||||| ||||||||||    
T  5316153 ataaatttgttgaatgttgaaaacaacactg 5316183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 21741675 - 21741545
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||| ||||||||    
T  21741675 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaataaagattgat 21741576  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    | | |||||||||||||||| ||||||||||    
T  21741575 aaaaatttgttgaatgttgaaaacaacactg 21741545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 50880843 - 50880972
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  ||||| |||||||||| |||| ||| ||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||||||||||    
T  50880843 tttcaataagtttttccctttccaaaacaa-actgtttggtaagtaaataaactgtctttcattaatttgaatgttgaaattgctaaaatagagattgat 50880941  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    || ||||||||||||||||| ||||||||||    
T  50880942 agtgatttgttgaatgttgaaaacaacactg 50880972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 50881019 - 50881082
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactg 292  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  50881019 ttgaatgttgaaattgctaaaatagagattgatagtgatttgttgaatgttgaaaacaacactg 50881082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 4977370 - 4977317
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  4977370 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 4977317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 4977440 - 4977399
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  4977440 ttgaatgttgaaattgctaaaatagagattgatagagatttg 4977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 5316230 - 5316271
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  5316230 ttgaatgttgaaattgctaaaatagagattgatagagatttg 5316271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 23181930 - 23181962
Alignment:
Q  66 ttccatccattccatcaccaccgattcacaaat 98  Q
    |||||||||||||||||||||||||||||||||    
T  23181930 ttccatccattccatcaccaccgattcacaaat 23181962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 5316300 - 5316352
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 345  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||||| ||||||    
T  5316300 tgatttctgcatatttaca--gttttgggagtttttgttaaaattatttaaattt 5316352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Complemental strand, 21741297 - 21741266
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  21741297 ggttcaatctcaacattgtatgtctaatgatg 21741266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 23182432 - 23182463
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  23182432 ggttcaatctcaacattgtatgtctaatgatg 23182463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 50881224 - 50881262
Alignment:
Q  308 tactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  50881224 tactattttgagagtttttgttaaaattattcaaatttc 50881262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 21741418 - 21741365
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  |||| |||  |||||||||||||||||||||||||||    
T  21741418 tgatttctgcatattta--ctgtattgaaagtttttgttaaaattattcaaatttc 21741365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 145 - 350
Target Start/End: Original strand, 45472543 - 45472753
Alignment:
Q  145 tctcaacaagcaaagtatttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatcc 244  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||     
T  45472543 tctcaacaagcaaagtatttcaattggttttcccctttccaaaacaacactatttggtaagtaaagaaactctctttcattaatttgaatgttgaaatct 45472642  T
Q  245 ctaaaatagagattgatagagatttgttgaatg-------ttgagaacaacactgatttatgcatatttatactgttttgggagtttttgttaaaattat 337  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  45472643 ctaaaatagagattgatagagatttgttgaatgttgagatttgagaacaacactgatttctgcatatt--tactgttttgggagtttttgttaaaattat 45472740  T
Q  338 tcaaatttctgtg 350  Q
    |||||||||||||    
T  45472741 tcaaatttctgtg 45472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 41878463 - 41878590
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||||||||||||   ||||||||||||||||    
T  41878463 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagattgat 41878562  T
Q  262 agagatttgttgaatgttgagaacaaca 289  Q
    |||||||||||||||||||| |||||||    
T  41878563 agagatttgttgaatgttgaaaacaaca 41878590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 41878720 - 41878773
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| |||||||||||  |||||||||| |||||||||||||||||||||||||    
T  41878720 tgatttctgcatatttat--tgttttgggaatttttgttaaaattattcaaatttc 41878773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 45472430 - 45472462
Alignment:
Q  66 ttccatccattccatcaccaccgattcacaaat 98  Q
    |||||||||||||||||||||||||||||||||    
T  45472430 ttccatccattccatcaccaccgattcacaaat 45472462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 45472817 - 45472848
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  45472817 ggttcaatctcaacattgtatgtctaatgatg 45472848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 23285672 - 23285542
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  23285672 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 23285573  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||||||||||||| ||||||||||    
T  23285572 agagatttgttgaatgttgaaaacaacactg 23285542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 27078486 - 27078617
Alignment:
Q  161 atttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattga 260  Q
    ||||||||  |||||||||||||||| |||||||  |||| |||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  27078486 atttcaatcagttttcccctttccaaaacaacacagtttgataagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattga 27078585  T
Q  261 tagagatttgttgaatgttgagaacaacactg 292  Q
    ||||||||||||||||||||| ||||||||||    
T  27078586 tagagatttgttgaatgttgaaaacaacactg 27078617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 22987231 - 22987101
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||| ||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  22987231 tttcaatcagttttcccctttccaaaacaatactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 22987132  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||| ||||||||| ||||||||||    
T  22987131 agagatttgtagaatgttgaaaacaacactg 22987101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 30853563 - 30853693
Alignment:
Q  161 atttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattga 260  Q
    ||||||||  |||||||||||||||| |||| | | ||||||||||||| ||| ||||||||||||||||||||||||||||  || |||||||||||||    
T  30853563 atttcaatcagttttcccctttccaaaacaatagtgtttggtaagtaaataaactctctttaattaatttgaatgttgaaattgct-aaatagagattga 30853661  T
Q  261 tagagatttgttgaatgttgagaacaacactg 292  Q
    ||||||||||||||||||||| ||||||||||    
T  30853662 tagagatttgttgaatgttgaaaacaacactg 30853693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 16592601 - 16592486
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||| ||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  16592601 tttcaatcagttttccccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 16592502  T
Q  262 agagatttgttgaatg 277  Q
    ||||||||||||||||    
T  16592501 agagatttgttgaatg 16592486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 30853820 - 30853873
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  30853820 tgatttatgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 30853873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 23285421 - 23285369
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 345  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23285421 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 23285369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 27078734 - 27078787
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  27078734 tgatttctgcatattta--ctgttttgggagttttttttaaaattattcaaatttc 27078787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 23285491 - 23285450
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  23285491 ttgaatgttgaaattgctaaaatagagattgatagagatttg 23285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 27078855 - 27078886
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  27078855 ggttcaatctcaacattgtatgtctaatgatg 27078886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 22986975 - 22986932
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaatta 336  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||    
T  22986975 tgatttctgcatattta--ctgttttgggagtttttgttaaaatta 22986932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 9579239 - 9579110
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9579239 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattactaaaatagagattgat 9579140  T
Q  262 agagatttgttgaatgttgagaacaacact 291  Q
    |||||||||||||||||||| |||||||||    
T  9579139 agagatttgttgaatgttgaaaacaacact 9579110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 9584934 - 9584805
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  9584934 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattactaaaatagagattgat 9584835  T
Q  262 agagatttgttgaatgttgagaacaacact 291  Q
    |||||||||||||||||||| |||||||||    
T  9584834 agagatttgttgaatgttgaaaacaacact 9584805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 48208744 - 48208873
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  48208744 tttcaatcagttttcccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 48208843  T
Q  262 agagatttgttgaatgttgagaacaacact 291  Q
    |||||||||||||||||||| |||||||||    
T  48208844 agagatttgttgaatgttgaaaacaacact 48208873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 35780296 - 35780161
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    ||||||| |||||| |||||||||| |||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||  |||||||||||||||||    
T  35780296 tttcaatcggtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattagtttgaatgttgaaattgctaaaatagagattgat 35780197  T
Q  262 agagatttgttgaatgttgagaacaacactgattta 297  Q
    |||||||||||||||||||| |||||||||| ||||    
T  35780196 agagatttgttgaatgttgaaaacaacactgtttta 35780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 23510600 - 23510470
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||||| |||||| |||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  23510600 tttcaatcagttttcccctttccaaaacaacactgtttggttagtaaataaactctctttcattaatttgaatgttgaaatttctaaaatagagattgat 23510501  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||||||||||||| ||||||||||    
T  23510500 agagatttgttgaatgttgaaaacaacactg 23510470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 54779733 - 54779860
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||  |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  54779733 tttcaatcagttttcccctttccataacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 54779832  T
Q  262 agagatttgttgaatgttgagaacaaca 289  Q
    |||||||||||||||||||| |||||||    
T  54779833 agagatttgttgaatgttgaaaacaaca 54779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 10978401 - 10978531
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||| |||||||||||  ||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  10978401 tttcaatcagtttccccctttccaaagcaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 10978500  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||| ||||||||||| ||||||||||    
T  10978501 agagattttttgaatgttgaaaacaacactg 10978531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 34769321 - 34769191
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||| ||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||    
T  34769321 tttcaatcagtttacccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgat 34769222  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    ||| |||||||||||||||| |||| |||||    
T  34769221 agaaatttgttgaatgttgaaaacagcactg 34769191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 47128280 - 47128410
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||||||||||| |||||| | ||||||||||||| ||| ||||||| ||||||||||||||||||||    |||||||||||||||    
T  47128280 tttcaatcagttttcccctttccaaaacaacattgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgtgaaaatagagattgat 47128379  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||||||||||||| ||||||||||    
T  47128380 agagatttgttgaatgttgaaaacaacactg 47128410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 10431218 - 10431126
Alignment:
Q  171 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatag 263  Q
    ||||| |||||| ||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||| ||||||   ||||||||||||||||||    
T  10431218 gtttttcccttttcaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgatgaaattgttaaaatagagattgatag 10431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 10431118 - 10431065
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10431118 tgatttatgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 10431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 47128527 - 47128580
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  47128527 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 47128580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 54779970 - 54780023
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  54779970 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaatttc 54780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 23510344 - 23510291
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  23510344 tgatttctgcatattta--ctgttttcggagtttttgttaaaattattcaaatttc 23510291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 47128457 - 47128498
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  47128457 ttgaatgttgaaattgctaaaatagagattgatagagatttg 47128498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 35780039 - 35779987
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||    
T  35780039 tgatttatgcatattta--ctgttttaggagtttt-gttaaaattattcaaatttc 35779987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Complemental strand, 23510223 - 23510192
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  23510223 ggttcaatctcaacattgtatgtctaatgatg 23510192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Complemental strand, 34768943 - 34768912
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  34768943 ggttcaatctcaacattgtatgtctaatgatg 34768912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Complemental strand, 35779918 - 35779887
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  35779918 ggttcaatctcaacattgtatgtctaatgatg 35779887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 54780091 - 54780122
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  54780091 ggttcaatctcaacattgtatgtctaatgatg 54780122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 34769049 - 34769007
Alignment:
Q  308 tactgttttgggagtttttgttaaaattattcaaatttctgtg 350  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||    
T  34769049 tactattttgggagtttttgctaaaattattcaaatttatgtg 34769007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 443
Target Start/End: Complemental strand, 10430997 - 10430968
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatga 443  Q
    ||||||||||||||||||||||||||||||    
T  10430997 ggttcaatctcaacattgtatgtctaatga 10430968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 29940336 - 29940216
Alignment:
Q  172 ttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgt 271  Q
    ||||||||||||||| |||||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  29940336 ttttcccctttccaaaacaacactgtctggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgt 29940237  T
Q  272 tgaatgttgagaacaacactg 292  Q
    |||||||||| ||||||||||    
T  29940236 tgaatgttgaaaacaacactg 29940216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 34715855 - 34715976
Alignment:
Q  171 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||| |||||||||| |||||| | ||||||||||||| ||| | ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  34715855 gtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttg 34715954  T
Q  271 ttgaatgttgagaacaacactg 292  Q
    ||||||||||| ||||||||||    
T  34715955 ttgaatgttgaaaacaacactg 34715976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 171 - 292
Target Start/End: Original strand, 34693443 - 34693564
Alignment:
Q  171 gttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||| |||||||||| |||||| | ||||||||||||| ||| | ||||| ||||||||||||||||||||  |||||||||||||||||||||||||     
T  34693443 gtttttccctttccaaaacaacattgtttggtaagtaaataaactttctttcattaatttgaatgttgaaattgctaaaatagagattgatagagattta 34693542  T
Q  271 ttgaatgttgagaacaacactg 292  Q
    ||||||||||| ||||||||||    
T  34693543 ttgaatgttgaaaacaacactg 34693564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 34693691 - 34693743
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 345  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  34693691 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 34693743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 34716103 - 34716155
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaattt 345  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  34716103 tgatttctgcatattta--ctgttttgggagtttttgttaaaattattcaaattt 34716155  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 346
Target Start/End: Original strand, 40445468 - 40445506
Alignment:
Q  308 tactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40445468 tactgttttgggagtttttgttaaaattattcaaatttc 40445506  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 29940169 - 29940128
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  29940169 ttgaatgttgaaattgctaaaatagagattgatagagatttg 29940128  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 40445383 - 40445424
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  40445383 ttgaatgttgaaattgctaaaatagagattgatagagatttg 40445424  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 34693812 - 34693843
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  34693812 ggttcaatctcaacattgtatgtctaatgatg 34693843  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 34716224 - 34716255
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  34716224 ggttcaatctcaacattgtatgtctaatgatg 34716255  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 19740989 - 19740859
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  ||||| |||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||   |||||||||||| |||    
T  19740989 tttcaatcagtttttccctttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagatagat 19740890  T
Q  262 agagatttgttgaatgttgagaacaacactg 292  Q
    |||||||||||||||||||| ||||||||||    
T  19740889 agagatttgttgaatgttgaaaacaacactg 19740859  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 19740733 - 19740680
Alignment:
Q  291 tgatttatgcatatttatactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  19740733 tgatttctgcatattta--ctgttttgggagtttttgttaaaattaatcaaatttc 19740680  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Complemental strand, 19740612 - 19740581
Alignment:
Q  414 ggttcaatctcaacattgtatgtctaatgatg 445  Q
    ||||||||||||||||||||||||||||||||    
T  19740612 ggttcaatctcaacattgtatgtctaatgatg 19740581  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 3954638 - 3954512
Alignment:
Q  162 tttcaattggttttcccctttccaacacaacactatttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgat 261  Q
    |||||||  |||||||| ||||||| |||||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||   ||||||||||||||||    
T  3954638 tttcaatcagttttcccatttccaaaacaacactgtttggtaagtaaataaactctctttcattaatttgaatgttgaaattgttaaaatagagattgat 3954539  T
Q  262 agagatttgttgaatgttgagaacaac 288  Q
    |||||||||||||||||||| ||||||    
T  3954538 agagatttgttgaatgttgaaaacaac 3954512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 8073799 - 8073704
Alignment:
Q  197 tttggtaagtaaagaaaatctctttaattaatttgaatgttgaaatccctaaaatagagattgatagagatttgttgaatgttgagaacaacactg 292  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8073799 tttggtaagtaaataaactctctttcattaatttgaatgttgaaattgctaaaatagagattgatagagatttgttgaatgttgaaaacaacactg 8073704  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 308 - 346
Target Start/End: Complemental strand, 3954366 - 3954328
Alignment:
Q  308 tactgttttgggagtttttgttaaaattattcaaatttc 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3954366 tactgttttgggagtttttgttaaaattattcaaatttc 3954328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 8073657 - 8073616
Alignment:
Q  229 ttgaatgttgaaatccctaaaatagagattgatagagatttg 270  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  8073657 ttgaatgttgaaattgctaaaatagagattgatagagatttg 8073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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