View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0715_high_2 (Length: 505)
Name: NF0715_high_2
Description: NF0715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0715_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 409
Target Start/End: Complemental strand, 398563 - 398183
Alignment:
| Q |
29 |
aagacattcagctcagtggattgaaagatcagatatcagttatggcatgctctcatattggtggtcataaatatgctggaacttctttattttgaacttg |
128 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |
|
|
| T |
398563 |
aagacattcagctcagaggattgaaagatcagatatcagttatggcatgctctcatattggtggtcataaatatgctggcacttatttattttgaatttg |
398464 |
T |
|
| Q |
129 |
gaaacactcacgaacacggacaccagacgcgacacagatacgttgacactagtnnnnnnnnnnnnnnnnnnggactaattaaacgtaattatattgtggt |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
398463 |
gaaacactcacgtacacggacaccagacgcgacacagatacgttgacactagtaaaaaaattggaaaaaaaggactaattaaacgtaattacattgtggt |
398364 |
T |
|
| Q |
229 |
gttcgacatcagcacatatcgaacatcagacacgtctttcatcagaagtgttggtgttgcagaggttttaaaggattttattgttgttggttaaaatgta |
328 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
398363 |
gttcgacaccagcacatatcgaacatcagacacgtctttcatcagaagtgttggtgttgcagaggttttaaaggattttattgttgttggttaaaatgta |
398264 |
T |
|
| Q |
329 |
gtgcgtacctaatatttaattacatgtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgcca |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
398263 |
gtgcgtacctaatatttaattacatgtatggttatgttactcctaatgatgtgtctgccttgctggatcaacacattgcca |
398183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 241 - 471
Target Start/End: Original strand, 405766 - 405996
Alignment:
| Q |
241 |
cacatatcgaacatcagacacgtctttcatcagaagtgttggtgttgcagaggttttaaaggattttattgttgttggttaaaatgtagtgcgtacctaa |
340 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| |||||| |||||||| |||||||| ||| |||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
405766 |
cacatatcgaacatcagacatgttttttatcataagtgtcggtgttgctgaggttttgaagaattttattgttgttagttaaattgtagtgcgtacctaa |
405865 |
T |
|
| Q |
341 |
tatttaattacatgtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgccaagggagaggtcatacaaaaactatggaggta |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
405866 |
tatttaattacatgtatggctatgttactcctaatgatgtgcctgccttgctggatcaacatattgccaagggagaggtcatacaaaaactatggaggta |
405965 |
T |
|
| Q |
441 |
accacttaatgtgtgcttttgacttccacat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
405966 |
accacttaatgtgtgcttttgacttccacat |
405996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 340 - 447
Target Start/End: Original strand, 416947 - 417054
Alignment:
| Q |
340 |
atatttaattacatgtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgccaagggagaggtcatacaaaaactatggaggt |
439 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
416947 |
atatttaattacaggtatggctatgttactcctaatgatgtgcctgccttgctagaccaacacattgccaagggagaggtcatacaaaaactatggaggt |
417046 |
T |
|
| Q |
440 |
aaccactt |
447 |
Q |
| |
|
||||||| |
|
|
| T |
417047 |
gaccactt |
417054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 416743 - 416815
Alignment:
| Q |
35 |
ttcagctcagtggattgaaagatcagatatcagttatggcatgctctcatattggtggtcataaatatgctgg |
107 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
416743 |
ttcagctccgaggattgaaagatcagatatcagttttggcatgttctcatattggtggtcataagtatgctgg |
416815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 398185 - 398135
Alignment:
| Q |
442 |
ccacttaatgtgtgctttt-gacttccacattacaatttgtttatttggcc |
491 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
398185 |
ccacttaatgtgtgctttttgacttccacattacaatttgtttatttggcc |
398135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 412
Target Start/End: Complemental strand, 22513740 - 22513682
Alignment:
| Q |
354 |
gtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgccaagg |
412 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
22513740 |
gtatggctatgttactcgtaatgatgtgcttgccttgctagaccaacacattgccaagg |
22513682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 22517081 - 22517033
Alignment:
| Q |
29 |
aagacattcagctcagtggattgaaagatcagatatcagttatggcatg |
77 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
22517081 |
aagaaattcagctccgaggattgaaagatcagatatcagttttggcatg |
22517033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 817 times since January 2019
Visitors: 4393